PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 18995.1 Da PI: 7.9325 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H LPERR03G33230.1 57 FVCKTCSRAFPTFQALGGHRTSH 79 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H LPERR03G33230.1 114 HECHICGLGFEMGQALGGHMRRH 136 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-5 | 53 | 83 | No hit | No description |
Pfam | PF13912 | 2.2E-10 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.96E-5 | 112 | 139 | No hit | No description |
Pfam | PF13912 | 1.6E-10 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.49 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MAKHPRQEEN QEEVSLALSL STDQSAASSD TSSSSAAKKA RRRRNQAVVA TSGEGEFVCK 60 TCSRAFPTFQ ALGGHRTSHL RGRSNGLDLG VVGEKAIKQL RAGGAGGERA AEKHECHICG 120 LGFEMGQALG GHMRRHREEM AGGGGAGAGS AADDWVWRCD AARPEERAAA EPPVLLELFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629244.1 | 5e-73 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9W0S5 | 1e-126 | A0A0D9W0S5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33230.1 | 1e-127 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-19 | C2H2 family protein |