PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G32540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 316aa    MW: 33300.4 Da    PI: 5.8457
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G32540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.92.3e-23208270163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv eL+a N+aL++el++lkk ++ ++ e+
  LPERR03G32540.1 208 ERELKRERRKQSNRESARRSRLRKQQECEELSQKVTELTAVNSALRSELNKLKKDCEDMEVEN 270
                      89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.5E-17201267No hitNo description
PfamPF001705.9E-21208270IPR004827Basic-leucine zipper domain
SMARTSM003388.8E-21208272IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.898210273IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10211265No hitNo description
CDDcd147024.76E-19213263No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASSAASPSS SKSDDDRRQE GADEPAAMQA YYAGVAGAGG GHPYAAWPPP QQHLMAAAAA  60
AYGAAVPFPM YHPAYYAHAS SMAASVPHMS GGAAASTAGT AAAAEGKSKR KTFGGPSGED  120
SSRSGDGGSE DSSDKRDDAD EKGLSMSPAK WRKLGHANAE GETSQAAMSD QSPANAAPNL  180
NIGMDIWSTS SMAAMPSGQD KALSQMDERE LKRERRKQSN RESARRSRLR KQQECEELSQ  240
KVTELTAVNS ALRSELNKLK KDCEDMEVEN SQLMDEMAQS EGSSVITTLS IKIDTSKDHH  300
GSSGQLNKHT NDDGKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224230RRSRLRK
2224231RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G32540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022508e-87AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879815.11e-137DNA-binding protein EMBP-1 isoform X4
SwissprotP250321e-53EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D9W0H40.0A0A0D9W0H4_9ORYZ; Uncharacterized protein
STRINGLPERR03G32540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-30G-box binding factor 1