PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 358aa    MW: 39549.4 Da    PI: 6.9976
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092642982155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yps++e+  LA+++gL+++q+ +WF N+R ++
  LPERR03G29990.1 264 NWPYPSETEKMTLAQSTGLNQKQINNWFINQRKRH 298
                      569*****************************885 PP
2ELK39.71e-13218239122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+LlrKY+g+Lg+LkqEFs
  LPERR03G29990.1 218 ELKHELLRKYGGSLGNLKQEFS 239
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.0E-1887131IPR005540KNOX1
PfamPF037904.5E-1989128IPR005540KNOX1
SMARTSM012561.3E-25140191IPR005541KNOX2
PfamPF037913.8E-21146189IPR005541KNOX2
SMARTSM011883.3E-7218239IPR005539ELK domain
PROSITE profilePS5121311.104218238IPR005539ELK domain
PfamPF037893.7E-10218239IPR005539ELK domain
PROSITE profilePS5007113.183238301IPR001356Homeobox domain
SMARTSM003899.6E-13240305IPR001356Homeobox domain
SuperFamilySSF466894.28E-18240302IPR009057Homeodomain-like
CDDcd000865.31E-14241302No hitNo description
Gene3DG3DSA:1.10.10.601.6E-26243301IPR009057Homeodomain-like
PfamPF059203.8E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MESFAILAGR GCNNNTNTNN DKSSPLSELP MPATAASASA PAPELITPGN NPPHSSPPPL  60
YQLLAGAGKA VVQGRQISPA DGVDDTEEVK ADIMSHPQYS ALLAAYLGCK KVGAPPDALA  120
RLSAVPAKPD AADGGQSRRR HEPRRDDPEL DQFMDAYCST LVKYREELER PLQEAAEFFR  180
RVETQLNWIA DSNCEGSASS EEEKDTSCHE EVELCDKELK HELLRKYGGS LGNLKQEFSK  240
RTKKGKLPGE ARQKLQHWWE RHYNWPYPSE TEKMTLAQST GLNQKQINNW FINQRKRHWK  300
PSPGDTAAFP AMEAAGSGGF HYSQFGGVAA LPLYIRRPFI ADGMYPAGIV KPTVLTRY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29990.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072965e-85AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.11e-134homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED21e-135KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0D9VZI80.0A0A0D9VZI8_9ORYZ; Uncharacterized protein
STRINGLPERR03G29990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-75KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]