PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 373aa    MW: 41382.9 Da    PI: 6.9902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10203251355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LPERR03G27440.1 203 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 251
                      58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-10198255No hitNo description
SuperFamilySSF474591.31E-16198267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16200268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-8203251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGQLQWLTTL CQRARRNHFT SVAGELVGSC RVHVISLAGR LEFLNSKKMY SGQQSDQCPG  60
PNSGKELLGV NWDSITMHQK MGYNSGPFGF QAYPMELEDR GGLYRSPNGT FCQNIQMSDD  120
PSGAKKRKGI DDCIALLNPS ASSRMQNVSD QQTEVSSQPE RISMEEDNQK TSSKMQSKED  180
SSDGDGTKED YVHVRAKRGQ ATNSHSLAER LRRKKISERM KLLQDLVPGC SKITGKAVML  240
DEIINYVQSL QRQVEFLSMK LATVNPELSF DIEQILSKQM MLSQDRHLAF YGVDPGSSTL  300
VAHFNQGVLQ PEMMCNISNP VDVLQGTAIH DISMVNQIPA MWEGLQNIPH MNLNSGATAD  360
SSINNAGSMK IEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650534.10.0PREDICTED: transcription factor bHLH74-like isoform X2
TrEMBLA0A0D9VYJ20.0A0A0D9VYJ2_9ORYZ; Uncharacterized protein
STRINGLPERR03G27440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein