PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 253aa    MW: 28868.3 Da    PI: 10.3866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-151892521683
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       ++++k+a+++  +++e+++lt  +++g++W+v++ y  k+++ +l+kGWk+F ++n+L+ gD+++F 
  LPERR03G27050.1 189 KIFSRKYANKY--PPHEDQMLT-LQRQGKRWQVQF-YISKRNTRMLSKGWKKFIRDNELQIGDTCLFN 252
                      35567777666..455665666.556*********.655566679**********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.08167IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-13669IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-10764No hitNo description
Gene3DG3DSA:2.40.330.101.8E-103170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788174253IPR003340B3 DNA binding domain
CDDcd100172.45E-14186251No hitNo description
Gene3DG3DSA:2.40.330.101.3E-16186251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-15187251IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-13189252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MWLVLILTIP HKFAQNFGDK IQGMIKLKAC NAGWAAFVSS HEINIGDFLV FRYIGNSQFK  60
VKIFGPSGCV ILSMFVRKPL MARQLSAPSR QKSGCVKASS HNAAKIGHDV QNMQGDLIGI  120
SSSSDNNLLK QWLTTERQNQ LEKDGTDKCN EKMKTENAFS SKDDQETPAA SGYVLSRSQI  180
PLTEVHRMKI FSRKYANKYP PHEDQMLTLQ RQGKRWQVQF YISKRNTRML SKGWKKFIRD  240
NELQIGDTCL FNN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879559.16e-86putative B3 domain-containing protein Os03g0621600 isoform X3
SwissprotQ851V53e-74Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VYE40.0A0A0D9VYE4_9ORYZ; Uncharacterized protein
STRINGLPERR03G27050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-13B3 family protein