PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G26990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 62259.2 Da PI: 5.65 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 347.9 | 1.7e-106 | 209 | 578 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 + Ll++ +a ++ d la a La+++ a+ +gdp +Rla+yf+ ALa+rla + pps++++ + ++e + +k++++++P+ kf+ LPERR03G26990.1 209 QSLLSVSRAAEA-DPGLAAAELATVRAAATDAGDPSERLAFYFADALARRLAC-----GSGAPPSAAPDARfaTDELTLCYKTLNDACPYSKFA 296 567777776554.88899999*******************************8.....3444444444333448999999************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 hltaNqaIlea+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp g + +l +t rL++fA+ lgv+fef + + + LPERR03G26990.1 297 HLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPaRIRITGVPSPFLGpqPAASLAATSTRLRDFAKLLGVDFEFVP-LLRP 389 ******************************************77666*********988888999************************.599* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++l+ +++ v+p+Ea+aVn++lql++ll +s +l +vL+l kslsP vv++ e e+++n++ F++rf++al+yy ++f+sl++ + r+s LPERR03G26990.1 390 VNELDQSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSVFESLDVAMTRDS 480 *****************************88888877...****************************************************** PP GRAS 280 eerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370 er+ vEr ++g++i+ +v ega+r+er+ ++W+ +e +GF+pv+ls++a +qa+lll +++ + y++ e +++ l W++rpL++v LPERR03G26990.1 481 PERVRVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVRLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLLTV 574 *******************8356889*****************************************7778999999999988*********** PP GRAS 371 SaWr 374 SaWr LPERR03G26990.1 575 SAWR 578 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.659 | 181 | 556 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-104 | 209 | 578 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHLPPP MPMPPHHQSK HHHHHHQMPP 60 MPQAQGAAPS HGQIPAGLSY GGGAAASAAW PAGEHFFSDA FGAASAADAV FDLAAAADFD 120 SDGWMESLIG DAPFQDSDLE RLIFTTTPPP PPPPPVPSPS PTHAAAAAAA AARPESTPAL 180 LPQAAAATTQ AACSSPSSAD ASCSSPILQS LLSVSRAAEA DPGLAAAELA TVRAAATDAG 240 DPSERLAFYF ADALARRLAC GSGAPPSAAP DARFATDELT LCYKTLNDAC PYSKFAHLTA 300 NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPARIRITGV PSPFLGPQPA 360 ASLAATSTRL RDFAKLLGVD FEFVPLLRPV NELDQSDFLV EPDEAVAVNF MLQLYHLLGD 420 SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSVFE SLDVAMTRDS 480 PERVRVERWM FGERIQRAVG PEEGADRTER MAGSSEWQTL MEWCGFEPVR LSNYARSQAD 540 LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 0.0 | 204 | 578 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G26990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650515.1 | 0.0 | PREDICTED: scarecrow-like protein 4 | ||||
Swissprot | Q53K16 | 0.0 | SCL7_ORYSJ; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A0D9VYD1 | 0.0 | A0A0D9VYD1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G26990.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8569 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-135 | GRAS family protein |
Publications ? help Back to Top | |||
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