PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G25950.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 361aa MW: 38658.9 Da PI: 7.0122

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G25950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	155.6	2.8e-48	97	257	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas...nsssg. 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++++ss c + +sss s++ + LPERR03G25950.1 97 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSDDASSV-VCedDGGSSSLSVDaaaG---Sk 186 589************************************************************55444.554322333333333330...13 PP TCP 89 ......................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 k++++aa++k++++ ++++l + + esrakar+rarertrek+r+++++ LPERR03G25950.1 187 hhtntnnppgaaaegkkpaaaaKSRRAAATPKPPRRLSNAHLPVPDkESRAKARERARERTREKNRMRWVT 257 34445567888899999999977777777888888888888777666*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.5E-45	99	253	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.325	100	158	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.211	233	250	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDIPLYQQLQ LTPPSPPKPA IDHHQSSFFY YSPSFAAAAA AAATADETIG SPPVMLHPFM 60 DIEQQQQQPD QPQQQTATAV EDVAAGAGAA DILDGFAAAR KDRHSKICTA GGMRDRRMRL 120 SLDVARKFFA LQDMLGFDKA SKTVQWLLNM SKAAIREIMS DDASSVVCED DGGSSSLSVD 180 AAAGSKHHTN TNNPPGAAAE GKKPAAAAKS RRAAATPKPP RRLSNAHLPV PDKESRAKAR 240 ERARERTREK NRMRWVTLAS AISVEQHAAT ADKSPGAASP NNLQQMSAEL EEGSSSTLHN 300 SGRMQEISVA SEASDDVIMA FAHGGGAYGG GGDSSNYYQQ QPQDQWELGG VVFASSRHHH 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDIPLYQQLQ LTPPSPPKPA IDHHQSSFFY YSPSFAAAAA AAATADETIG SPPVMLHPFM  60
DIEQQQQQPD QPQQQTATAV EDVAAGAGAA DILDGFAAAR KDRHSKICTA GGMRDRRMRL  120
SLDVARKFFA LQDMLGFDKA SKTVQWLLNM SKAAIREIMS DDASSVVCED DGGSSSLSVD  180
AAAGSKHHTN TNNPPGAAAE GKKPAAAAKS RRAAATPKPP RRLSNAHLPV PDKESRAKAR  240
ERARERTREK NRMRWVTLAS AISVEQHAAT ADKSPGAASP NNLQQMSAEL EEGSSSTLHN  300
SGRMQEISVA SEASDDVIMA FAHGGGAYGG GGDSSNYYQQ QPQDQWELGG VVFASSRHHH  360
Y

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G25950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB088343	1e-98	AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds.
GenBank	AB491555	1e-98	AB491555.1 Oryza nivara tb1 gene for teosinte branched 1, complete cds, strain: W0106.
GenBank	AB491556	1e-98	AB491556.1 Oryza rufipogon tb1 gene for teosinte branched 1, complete cds, strain: W1294.
GenBank	AB491557	1e-98	AB491557.1 Oryza barthii tb1 gene for teosinte branched 1, complete cds, strain: W0652.
GenBank	AC091775	1e-98	AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence.
GenBank	AF322143	1e-98	AF322143.1 Oryza sativa teosinte branched1 protein (tb1) gene, partial cds.
GenBank	AK107083	1e-98	AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence.
GenBank	AP014959	1e-98	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	AY043215	1e-98	AY043215.1 Oryza sativa teosinte branched1 protein (tb1) mRNA, complete cds.
GenBank	AY286002	1e-98	AY286002.1 Oryza sativa (indica cultivar-group) teosinte-branching 1 (TB1) gene, complete cds.
GenBank	CP012611	1e-98	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630237.1	1e-128	transcription factor TB1-like
Swissprot	Q8LN68	1e-129	TB1_ORYSJ; Transcription factor TB1
TrEMBL	A0A0D9VXZ9	0.0	A0A0D9VXZ9_9ORYZ; Uncharacterized protein
STRING	LPERR03G25950.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-25	TCP domain protein 12

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]