PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G23750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 333aa    MW: 36373.4 Da    PI: 8.0371
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G23750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.86.7e-1934101268
         trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                      Wt  e+++Liea+++++e  r+ + + +++W++v +++++rg++rs++qC+++w+nl ++ykk+++++
  LPERR03G23750.1  34 WTVPETMVLIEAKKRVHEGRRAaADQGMARWRWVEDFCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHD 101
                      **************9999888636899*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-62493IPR009057Homeodomain-like
PROSITE profilePS500907.9092691IPR017877Myb-like domain
SuperFamilySSF466892.33E-62993IPR009057Homeodomain-like
PfamPF138371.2E-1432119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDAGGGGALL GQEECHEAMN AMVVDQREHR RGNWTVPETM VLIEAKKRVH EGRRAAADQG  60
MARWRWVEDF CWRRGCRRSQ NQCNDRWDNL MRDYKKVRAH DLAAAAGGGE GRESYWAMCR  120
AERKERGLPA NLLREIYDAM GEIVERRMSS GGGGGGGGGV FLGSSPSSAA AAAAAVQASP  180
LAQLLPRPLE TTTAAAANCR SGSPERKRRR PSLDNERQQQ PASGRHHQQQ EHHDDGEYDH  240
HGDEDEESSE EEGLGGAMGR CAAILSVALE KREAAEERRH REVVAVEERR GRARQARREA  300
GEQCVAGLAA AVSQLAGSML ALAAKRRGPA SPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G23750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357921e-82AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149591e-82AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879661.11e-133trihelix transcription factor ASR3
TrEMBLA0A0D9VX690.0A0A0D9VX69_9ORYZ; Uncharacterized protein
STRINGLPERR03G23750.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-40Trihelix family protein