PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G23380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 133aa MW: 14412.7 Da PI: 8.2249 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.4 | 5.3e-22 | 49 | 106 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++C +kkkve +dp++ + ++Y g H+h LPERR03G23380.1 49 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPTLnLRVVYDGAHHH 106 7*******************************************97479********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.315 | 43 | 109 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-24 | 43 | 109 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-21 | 44 | 109 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-21 | 48 | 108 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-20 | 49 | 106 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MASNSQPNTT AAGGGRGQGD EEKQTPPPET AASAGGGGDD DAVQLVMPED GYEWKKYGQK 60 FIKNIQKNRS YFRCRDQRCG AKKKVEWHPH DPTLNLRVVY DGAHHHGSPS SSSAAAANQY 120 DLSTQYFGGA RSQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G23380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651653.1 | 2e-66 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A0D9VX28 | 2e-95 | A0A0D9VX28_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G23380.1 | 4e-96 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46350.1 | 8e-13 | WRKY DNA-binding protein 8 |