PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22960.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21248.3 Da PI: 9.4837 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 242.1 | 1.2e-74 | 8 | 163 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l+a+++ + +e lk+++ ++++n++++ s+s++ ++ LPERR03G22960.2 8 PAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPAVED-------PFQESLKMHNISFRENYSEYGSSSKYGRV 94 579****************************************************996.......899*************************9 PP YABBY 99 ekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ s+n+ ++ + +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl LPERR03G22960.2 95 PMMfSRNDPGHMLH----VRTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 163 99879999999997....899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.0E-71 | 10 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-8 | 106 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-5 | 109 | 157 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSAQIALPAP EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60 PAVEDPFQES LKMHNISFRE NYSEYGSSSK YGRVPMMFSR NDPGHMLHVR TPEKRQRVPS 120 AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHFPNIH FGLGSHESSK KLDEAIGAPS 180 PQKIQRLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274014 | 0.0 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. | |||
GenBank | AF098753 | 0.0 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. | |||
GenBank | AK070479 | 0.0 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. | |||
GenBank | EU846982 | 0.0 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880111.1 | 1e-125 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-126 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0D9VWY4 | 1e-138 | A0A0D9VWY4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22960.1 | 1e-137 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-59 | YABBY family protein |