PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21984.1 Da PI: 9.7665 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231.5 | 2e-71 | 8 | 168 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 ++e+vCyv+CnfCntila vsvPs+s++++vtvrCGhCtsllsvnl+ q l+a+++ + +e lk+++ ++++n++++ s+s LPERR03G22960.1 8 PAPEHVCYVHCNFCNTILAyryprVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPAVED-------PFQESLKMHNISFRENYSEYGSSS 94 579***************8777789***********************************996.......899********************* PP YABBY 94 tsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ ++ s+n+ ++ + +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl LPERR03G22960.1 95 KYGRVPMMfSRNDPGHMLH----VRTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 168 ****999879999999997....899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-67 | 10 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 111 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-5 | 114 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSAQIALPAP EHVCYVHCNF CNTILAYRYP RVSVPSNSML NIVTVRCGHC TSLLSVNLRG 60 LIQSLPAVED PFQESLKMHN ISFRENYSEY GSSSKYGRVP MMFSRNDPGH MLHVRTPEKR 120 QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH FPNIHFGLGS HESSKKLDEA 180 IGAPSPQKIQ RLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274014 | 0.0 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. | |||
GenBank | AF098753 | 0.0 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. | |||
GenBank | AK070479 | 0.0 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. | |||
GenBank | EU846982 | 0.0 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880111.1 | 1e-122 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-123 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0D9VWY3 | 1e-142 | A0A0D9VWY3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22960.1 | 1e-143 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-56 | YABBY family protein |