PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 598aa    MW: 68817.9 Da    PI: 9.8012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-18321071798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++p kfa+++g k   + +++l+  +g++++v +   k+s++ vlt+GW  Fv+++++k gDf+vF+++g+s+f   vk+f 
  LPERR03G21790.1  32 TIPHKFAQNFGDK--IQGMIKLKACNGNTFSVLV--AKCSDKLVLTAGWAAFVSSHDIKIGDFLVFRYIGNSQF--EVKIFG 107
                      69*****766655..4449***************..**************************************..888885 PP
2B354.71.8e-17313400198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+   d + + r+++p kf ++++g+   +kt++le+  + + +v++  +kk +r vl++GW++Fv+a+gLk gDf+vFk++g  +  l v
  LPERR03G21790.1 313 FFKVM--IDDFHK-RMIIPEKFERHFKGV--ITKTIKLET-CNDTLDVQI--TKKLNRLVLGSGWESFVSAHGLKMGDFLVFKYNG--NLLLQV 396
                      78888..777766.6*******8777888..677999998.67899****..*******************************977..444577 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  LPERR03G21790.1 397 LIFD 400
                      7776 PP
3B342.11.6e-135265931283
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      +s+ l +++++ +++       +++l+l++ + +sW+v+++  + ks++  lt+GWk+F+++n+L+ gD ++F+
  LPERR03G21790.1 526 SSCALEISRQYDDAYlP---YHGQELILRH-HDKSWKVQFCRyNHKSRK--LTQGWKRFAHDNNLRIGDLCLFE 593
                      56777788888777741...2345788777.99*******651444444..99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-424109IPR003340B3 DNA binding domain
CDDcd100172.39E-1632106No hitNo description
Gene3DG3DSA:2.40.330.107.5E-2032111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2032111IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-1532106IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84333109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-10210267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-7215279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-21307404IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-24308415IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956310402IPR003340B3 DNA binding domain
CDDcd100176.28E-21311400No hitNo description
SMARTSM010191.7E-10313402IPR003340B3 DNA binding domain
PfamPF023621.5E-15313400IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-18506597IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-16507596IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562515598IPR003340B3 DNA binding domain
SMARTSM010199.4E-4518598IPR003340B3 DNA binding domain
CDDcd100171.92E-12525593No hitNo description
PfamPF023626.2E-11526594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MESGERTETW DKKTKLGRDG RVFLFGPGPL DTIPHKFAQN FGDKIQGMIK LKACNGNTFS  60
VLVAKCSDKL VLTAGWAAFV SSHDIKIGDF LVFRYIGNSQ FEVKIFGPSG CVKASSHNAA  120
KVAHDVQNMQ GDLIGISSRS DNNLLKQWLT TERQNQLEMD GTDKCNEKMK MKTENAFSSK  180
DDQETPAASG YVLSCSQIPL TEVHRMKVKE KVRAVQSHHP VFVTVMKKSN ITRLPCHLIF  240
STKYANKYLP REDQMLTLQR QGKRWQIGDT CLFEQLRNEN PFTMNKMRKP NTRSTERVEY  300
YHCNRTDNQE KHFFKVMIDD FHKRMIIPEK FERHFKGVIT KTIKLETCND TLDVQITKKL  360
NRLVLGSGWE SFVSAHGLKM GDFLVFKYNG NLLLQVLIFD PSGCEKSTSC CMKNAIDHVE  420
QRWKEPTDVS TTCHDQPKKS PQNRNKHWMQ KDSTGKGHKI INIRSSSTPS NVSEHVETHF  480
VAGCILPRRT FIPEVQENKM KETIQAINSK IPMYGNAITK YNIFGSSCAL EISRQYDDAY  540
LPYHGQELIL RHHDKSWKVQ FCRYNHKSRK LTQGWKRFAH DNNLRIGDLC LFETLKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126112e-92CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879558.11e-143putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VWG60.0A0A0D9VWG6_9ORYZ; Uncharacterized protein
STRINGLPERR03G21790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-20B3 family protein