PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21760.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 528aa    MW: 59910.8 Da    PI: 8.4241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21760.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-1634116997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++ +++p+kf++++gg+     t+ le+++  ++ vk+  +k+ +r+vl  GW  Fv+an+++e+D++ F+++++s+f   v ++
  LPERR03G21760.4  34 SANFRHSMIIPNKFLDHFGGE--ILATIELESPRVIVYIVKV--TKHMNRTVLNCGWGAFVDANQIEENDSLFFRHIENSRF--EVLIL 116
                      4445566********888877..6789***************..*********************************99999..66665 PP
2B361.91.1e-19224320499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                      v++ s+v  +g lv+ k++a++h  +  +s+t+tle+++  ++W  k+ +rk +++y+l + W eFv++n+LkegD+++F+l+  + ++f+ +v
  LPERR03G21760.4 224 VMKYSNVKLRGSLVIAKHYASAHFPN--TSQTITLESRDKnKKWHPKFYIRKDRSGYILYGRWTEFVHDNRLKEGDICIFELTkFTgRNFRATV 315
                      6777999999*************855..6789*****6655*******88999999*************************8855568888888 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  LPERR03G21760.4 316 HLLRE 320
                      88775 PP
3B345.71.1e-144415241599
                      -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +++ k+fa+++       e++   l+  +++ W++k+  + +sg   ++t  W+ Fv++n L+ +D+++F+l+++ ++ +++v+++r+
  LPERR03G21760.4 441 TIRFGKEFATRYlpR---GEQTLTLLMKGKSKAWQIKM--CPRSGDaQMFTMDWRAFVHDNCLRIKDICLFQLMNNeRRLTMTVHIIRH 524
                      356679999999542...2333445566799*******..666655599*************************998*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-1826123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1826119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1727121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1327117No hitNo description
SMARTSM010193.5E-829119IPR003340B3 DNA binding domain
PfamPF023621.9E-1433115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-23213321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-23216317IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-22219319No hitNo description
SMARTSM010193.4E-12221321IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747221321IPR003340B3 DNA binding domain
PfamPF023621.9E-18222320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18417525IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-16418525IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-11423523No hitNo description
SMARTSM010190.0037425525IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01427525IPR003340B3 DNA binding domain
PfamPF023621.6E-13441524IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDGQSSHTKK PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE  60
LESPRVIVYI VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG  120
CEKIFSRSGI KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH  180
ELDDPQTPLV PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK  240
HYASAHFPNT SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI  300
FELTKFTGRN FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST  360
NSVKKEPDDG QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES  420
EVPIYASVMN KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG  480
DAQMFTMDWR AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21760.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D9VWG20.0A0A0D9VWG2_9ORYZ; Uncharacterized protein
STRINGLPERR03G21760.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]