PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G21760.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 578aa MW: 65295 Da PI: 9.0272

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G21760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.1	5e-16	84	166	9	97
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++ +++p+kf++++gg+ t+ le+++ ++ vk+ +k+ +r+vl GW Fv+an+++e+D++ F+++++s+f v ++ LPERR03G21760.1 84 SANFRHSMIIPNKFLDHFGGE--ILATIELESPRVIVYIVKV--TKHMNRTVLNCGWGAFVDANQIEENDSLFFRHIENSRF--EVLIL 166 4445566******888877..6789***********..*******************************99999..66665 PP
2	B3	61.7	1.2e-19	274	370	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 v++ s+v +g lv+ k++a++h + +s+t+tle+++ ++W k+ +rk +++y+l + W eFv++n+LkegD+++F+l+ + ++f+ +v LPERR03G21760.1 274 VMKYSNVKLRGSLVIAKHYASAHFPN--TSQTITLESRDKnKKWHPKFYIRKDRSGYILYGRWTEFVHDNRLKEGDICIFELTkFTgRNFRATV 365 6777999999***********855..6789*6655***88999999***********************8855568888888 PP EEE-S CS B3 95 kvfrk 99 +++r+ LPERR03G21760.1 366 HLLRE 370 88775 PP
3	B3	45.5	1.3e-14	491	574	15	99
-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ k+fa+++ e++ l+ +++ W++k+ + +sg ++t W+ Fv++n L+ +D+++F+l+++ ++ +++v+++r+ LPERR03G21760.1 491 TIRFGKEFATRYlpR---GEQTLTLLMKGKSKAWQIKM--CPRSGDaQMFTMDWRAFVHDNCLRIKDICLFQLMNNeRRLTMTVHIIRH 574 356679999999542...2333445566799*****..666655599*********************998*******997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.18	76	169	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.24E-18	76	173	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.6E-17	77	171	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.01E-13	77	167	No hit	No description
SMART	SM01019	3.5E-8	79	169	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-14	83	165	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-22	263	371	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-23	266	367	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.10E-22	269	369	No hit	No description
SMART	SM01019	3.4E-12	271	371	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.747	271	371	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-18	272	370	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-18	467	575	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-16	468	575	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.98E-11	473	573	No hit	No description
SMART	SM01019	0.0037	475	575	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.01	477	575	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-13	491	574	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKK 60 PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE LESPRVIVYI 120 VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG CEKIFSRSGI 180 KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH ELDDPQTPLV 240 PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK HYASAHFPNT 300 SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI FELTKFTGRN 360 FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST NSVKKEPDDG 420 QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES EVPIYASVMN 480 KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG DAQMFTMDWR 540 AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKK  60
PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE LESPRVIVYI  120
VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG CEKIFSRSGI  180
KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH ELDDPQTPLV  240
PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK HYASAHFPNT  300
SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI FELTKFTGRN  360
FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST NSVKKEPDDG  420
QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES EVPIYASVMN  480
KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG DAQMFTMDWR  540
AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G21760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102169	1e-122	AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630232.2	0.0	LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
Swissprot	Q851W5	0.0	Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBL	A0A0D9VWF9	0.0	A0A0D9VWF9_9ORYZ; Uncharacterized protein
STRING	LPERR03G21760.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-17	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]