PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G18850.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 398aa    MW: 42512.1 Da    PI: 7.6044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G18850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011258280123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cg+ F +   L  H  +H
  LPERR03G18850.1 258 YECPGCGRAFQSYQALGGHRASH 280
                      99********9999888888777 PP
2zf-C2H210.70.0017336358123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C k F +   L  H r+H
  LPERR03G18850.1 336 FVCPVCRKEFGSGQALGGHKRSH 358
                      89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0841739IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.03E-81739No hitNo description
PROSITE profilePS5015710.2841740IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-61739IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-8253280No hitNo description
PfamPF139127.9E-11257282IPR007087Zinc finger, C2H2
SMARTSM003550.21258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492258285IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159336359IPR007087Zinc finger, C2H2
SMARTSM003550.092336358IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-10336358IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDDDVIVLSS NSGATRHSCK VCGKGFPCGR SLGGHMRSHS LTEVETAAAA AAVADEGDAK  60
IEHRWIHHGG GGGGGGGGGG GYGLRENPKK TRRMSVSDDV DDGDGDLLSP PSFRQPVLGR  120
VRSSHLFDAD VDAVDADDDD GDDLDRIETA AAVVMAAPRR RPRSVRVPAA ASDDEPEDVA  180
RCLMMLSQDT GRPWNNSDDN SHYHHHSDDD NFELSLSYAS HTEIKKKKKT SSSSKRRKKK  240
TKFTAPTTAV IGEKRGRYEC PGCGRAFQSY QALGGHRASH KRINSNCSLV VNLAAADQPE  300
QSIETNATSF SSASTSASLN NNVTMLRPPV KKVTKFVCPV CRKEFGSGQA LGGHKRSHTI  360
AGELGDREEG GGIVKQEHCL LTKRFLDLNL PAPGGNDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163PRRRPRS
2225239KKKKTSSSSKRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G18850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.11e-126uncharacterized protein LOC4333158
TrEMBLA0A0D9VVF50.0A0A0D9VVF5_9ORYZ; Uncharacterized protein
STRINGLPERR03G18850.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-19C2H2-like zinc finger protein