PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G16640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 30497.4 Da PI: 7.5036 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G+g+W++++++ g+ R+ k+c++rw +yl LPERR03G16640.1 14 KGPWTPEEDIILVSYVQEHGPGNWRAVPARTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ E+ l+v++ ++lG++ W++Ia++++ +Rt++++k++w+++l LPERR03G16640.1 67 RGGFSDHEERLIVHLQALLGNR-WSAIASYLP-HRTDNDIKNFWNTHL 112 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.408 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.757 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRPPCCDKE GVKKGPWTPE EDIILVSYVQ EHGPGNWRAV PARTGLLRCS KSCRLRWTNY 60 LRPGIRRGGF SDHEERLIVH LQALLGNRWS AIASYLPHRT DNDIKNFWNT HLKKKLLAAN 120 HIVSSSSTPP PAKGDWERKL QTDIGLARQA LRDALSVNGA APPAVTVNAG GGDDSAAYAL 180 NARDISMMLS GWAAPSGKGA IADGIGAAES ALSEVTGAAE CSAASSASNS NPVLAPSASA 240 SSKATVAGVP PLSAIESWLL LDDSSEPRLA LEVEEQLLDV ALRNYAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G16640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC084762 | 1e-133 | AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence. | |||
GenBank | AF474136 | 1e-133 | AF474136.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds. | |||
GenBank | AP014959 | 1e-133 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-133 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630096.1 | 1e-124 | myb-related protein 306 | ||||
Swissprot | P81392 | 3e-90 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0D9VUK5 | 0.0 | A0A0D9VUK5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G16640.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-87 | myb domain protein 96 |
Publications ? help Back to Top | |||
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