PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 341aa    MW: 37500 Da    PI: 6.0507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11152199355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  LPERR03G08340.1 152 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIDYVKQLE 199
                      5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.081149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-9152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-16153212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-9154203No hitNo description
SMARTSM003536.6E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDKQNQWLTE PEPEEFTYMY HQEEHSRMQE KFVGTPILDP QVHFDQFYTA PPLAPNPNPF  60
HPSHSHSSSF PTFVDSALPT LTFGSAATKN EPQPSPPPSS SNVLSFSGLA QGAAATTTLD  120
FSGRGWQQDD GVGIGVFQQP PERRSRLPGN AQEHVIAERK RREKLQQQFV SLATIVPGLK  180
KTDKISLLGS TIDYVKQLEE KVKALEEQQD TAAFESKCRI TADDGGRGEG PNGGSNSGAD  240
DGSSGSSPTV EANIHGNTVL LKICCKERRG LLVMVLTELE KQGLSIINTS AVPFTDSCLN  300
ITITAKARLI AHLWKCGCKL EIRWFDRFQF YADRGGFFDS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690638.11e-158PREDICTED: transcription factor bHLH19-like isoform X1
RefseqXP_015690639.11e-158PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLA0A0D9VRJ00.0A0A0D9VRJ0_9ORYZ; Uncharacterized protein
STRINGLPERR03G08340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-28bHLH family protein