PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G07400.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 274aa    MW: 30298.9 Da    PI: 7.3074
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G07400.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.1e-1411107198
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ffkv      +++  l lp kf++e     g+  ++ +l +  ++ + W+v++ ++   g+ +lt+GW +F +a+++ +g f+vF++dg  +f 
  LPERR03G07400.2  11 FFKVI--LPGSSKTKLKLPDKFVRELeheHGQILRDAKLHVAGRRRQLWDVRVVVDDVTGGAYLTRGWLQFTRAHDIGDGLFLVFRFDGAATF- 101
                      77777..445556669********99767444458899***************9999999999***********************9886666. PP

                      .EEEEE- CS
               B3  92 lvvkvfr 98 
                        ++vf+
  LPERR03G07400.2 102 -AITVFD 107
                      .888887 PP
2B349.11e-151732421484
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      + l +p +f e+hg+ k+   ++ l+  +gr+W+v+l++  ++k++r  l+ GW +F+ +ngL +gD++ F+l
  LPERR03G07400.2 173 QYLNVPVEFQEAHGYAKRA--EVALRM-RGRTWTVRLKHsrKQKGQRAALRYGWHQFCVDNGLAVGDTCFFRL 242
                      56889********999766..566554.88*******9975555566************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-178111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.5339109IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1710115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-1111107No hitNo description
SMARTSM010194.1E-1211109IPR003340B3 DNA binding domain
PfamPF023625.6E-1111107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-25155269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-16157243IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-4158269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971160269IPR003340B3 DNA binding domain
PfamPF023624.2E-13174242IPR003340B3 DNA binding domain
CDDcd100173.28E-11175242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MANSRLANYE FFKVILPGSS KTKLKLPDKF VRELEHEHGQ ILRDAKLHVA GRRRQLWDVR  60
VVVDDVTGGA YLTRGWLQFT RAHDIGDGLF LVFRFDGAAT FAITVFDPTM CRRDYYRHDA  120
GESGSSSSGG GDGDCDSDSD ASEGDGDGGG GDVATSQFAV TLRLCNLGEK QAQYLNVPVE  180
FQEAHGYAKR AEVALRMRGR TWTVRLKHSR KQKGQRAALR YGWHQFCVDN GLAVGDTCFF  240
RLLPVPNHAG AGDDDDGDHV LKVSVRKADG TFIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G07400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-108B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-109Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0D9VR520.0A0A0D9VR52_9ORYZ; Uncharacterized protein
STRINGLPERR03G07400.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]