PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G05580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 26648.7 Da PI: 10.0028 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 139 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp++f++++ + +++ +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD vF+l++ ++f +v LPERR03G05580.1 139 FVKPMLHSHVVRGFWLGLPRHFCDTYL-P-KRDAIVTLVDEKDEEFSTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLIKPTTF--KV 224 89*********************9994.3.36679***************..566555..9***********************986777..99 PP EEE-S CS B3 95 kvfrk 99 +++r+ LPERR03G05580.1 225 HIIRA 229 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-19 | 131 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-24 | 132 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-25 | 137 | 228 | No hit | No description |
Pfam | PF02362 | 2.9E-15 | 139 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-18 | 139 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.758 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAMAVEKSGG MSAYEAARER TVEENKRKME ALNLRHLSAA VAVAPKTPSP MKQKRRRIIE 60 AAVVAPSPPR RSRRLANLPE VKYAEVAPDG AERMKRSPRK PTDSIYLATH GSISMEARLE 120 AARKAEELEA QLDPEFPSFV KPMLHSHVVR GFWLGLPRHF CDTYLPKRDA IVTLVDEKDE 180 EFSTNYLAYK NGLSGGWAGF ALDHGLLDGD ATVFQLIKPT TFKVHIIRAT VGDRNEVAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G05580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122017 | 0.0 | AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633231.1 | 1e-161 | B3 domain-containing protein Os03g0184500 | ||||
Swissprot | Q10QS9 | 1e-162 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A0D9VQE6 | 1e-175 | A0A0D9VQE6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G05580.1 | 1e-176 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-46 | B3 family protein |
Publications ? help Back to Top | |||
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