PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 230aa    MW: 23781.1 Da    PI: 4.0116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-1222621255
              AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      g W+AeIrdp+    +  r++lg+f tae Aa a++ a+++++g
  LPERR03G05420.1 22 AGHWAAEIRDPV----KgVRVWLGTFPTAESAALAYDDAARAIRG 62
                     688*******75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.2681370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-241871IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-161871IPR016177DNA-binding domain
SMARTSM003807.6E-231876IPR001471AP2/ERF domain
PfamPF008473.9E-62162IPR001471AP2/ERF domain
CDDcd000181.69E-222370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHWAAEIR DPVKGVRVWL GTFPTAESAA LAYDDAARAI  60
RGSRAKLNFP SENTRKRGRA VTAVAIAAAP AATPVIDLDE HEDDDVTAMA SIKYEPETSE  120
SSGSGSSALP DFSWQGISAA SDEAAPVLDV DDLADGGDKK RARTESEEDS ASGDDLFDAL  180
LFADPLNYFG GGGGYESLDS LFSADAVQGA GAGEMGLWSF DDGCLGSLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1423701563ATERF1
3gcc_A2e-1423701563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698500.13e-52ethylene-responsive transcription factor ERF073
TrEMBLA0A0D9VQC41e-161A0A0D9VQC4_9ORYZ; Uncharacterized protein
STRINGLPERR03G05420.11e-162(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-16ERF family protein