PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G04900.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YA

Protein Properties

Length: 269aa MW: 29522.8 Da PI: 7.5271

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G04900.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.7	1.9e-33	167	223	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl k+rkpylheSRh+hA++R+Rg+gGrF LPERR03G04900.2 167 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHQHAMKRARGTGGRF 223 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-39	165	226	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.283	166	226	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-29	168	223	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.2E-25	169	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	171	191	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.2E-25	200	223	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MLPPHLTVDE ALRFGDAFLG GGELAATIYD SYCIILAENG TVMIQFGHQM PDYESSATQS 60 TSGSPREVSG MSEGSRNEQN DQSGNLNGYS KSDEGKMMSA LSLGKSETVY AHSEPDRSQP 120 FAISYPYADS FYGGAVATYG SHAIMHPQIV GMMSSSRVPL PIEPATEEPI YVNAKQYHAI 180 LRRRQLRAKL EAENKLVKNR KPYLHESRHQ HAMKRARGTG GRFLNTKQQS ESSDGGTPRD 240 HAANGVVFSK HEHGLSSSDL HHRRAREGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-23	167	229	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G04900.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832705	0.0	CT832705.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence.
GenBank	EU847006	0.0	EU847006.1 Oryza sativa Japonica Group clone KCS364E08 CCAAT-binding transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631822.1	1e-161	nuclear transcription factor Y subunit A-7
Swissprot	Q9LVJ7	5e-43	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A0D9VQ49	0.0	A0A0D9VQ49_9ORYZ; Uncharacterized protein
STRING	LPERR03G04900.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	2e-45	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]