PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 627aa    MW: 66527.2 Da    PI: 5.1667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05518543123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C   +C ++F+++ +L +H ++ +
  LPERR03G03440.1 518 FECDidYCRMTFKTRAELSVHKKNtC 543
                      89*******************99866 PP
2zf-C2H212.50.00044542565223
                      EET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                      +C+   Cg++F+++ +LkrH + H
  LPERR03G03440.1 542 TCTikSCGRRFRSHNYLKRHESIH 565
                      588889**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035523518540IPR015880Zinc finger, C2H2-like
SMARTSM003550.094541565IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154541570IPR007087Zinc finger, C2H2
PROSITE patternPS000280543565IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-6546572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.68E-10556599No hitNo description
SMARTSM003550.045571595IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427571600IPR007087Zinc finger, C2H2
PROSITE patternPS000280573595IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-9573595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.72E-7590623No hitNo description
Gene3DG3DSA:3.30.160.606.4E-9596623IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539601623IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MRIRRYAARL LAASTATSDS PPPQPAAAAA AWCHAAADDC AICRPPSPQV APDGIKQKGH  60
IVGRAPEPER RSDARIGRDE GTPVPEDQGR DIDGGPPAKK LLVFSDDVVR LEVEEGSGEI  120
AAGDASEPAA RVGVPVANGA VSKQEDRVPT CLVDESASGL VAKEVASPAN GAIAEQVLKG  180
ASLANGAVNE PGVSERVPFL CEAATEPGAG VSVPEVTEEA LAGGEGAAKL EVTKGQSLVT  240
DSAAAMEVTK EVSVVNKAAA ADSDLSERVS TEPGVKLSVP QVIERGAFTD RDVTGFASLD  300
NVGAVEPEVT GSGSLVNEAT EMEVNGGAYV SSRATAESED TGRASASSGD GDIALDEPQP  360
PDCFKVANAA EDVASRLHPC TANAESSGGS TTNDHVSLKS PTAEEVVQPG GCVDTPSVSC  420
LSDIVARSIG KSSRTDIICY ARRRGKRKLE MEVKEENVEM DDSAICDQYD DKLASERAGP  480
CESATSTAIS VEIKIADIKR ELEDNSAASK GKRKKGRFEC DIDYCRMTFK TRAELSVHKK  540
NTCTIKSCGR RFRSHNYLKR HESIHNDDMP YKCPWEGCSM AFKWSWDRGE HFQIHTGKKP  600
YKCTTPGCSK IYKFVSDFTR HKRRCKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-4251862423129Lysine-specific demethylase REF6
6a58_A7e-4251862423129Lysine-specific demethylase REF6
6a59_A7e-4251862423129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441447RRRGKRK
2441448RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G03440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297550.0AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0D9VPK60.0A0A0D9VPK6_9ORYZ; Uncharacterized protein
STRINGLPERR03G03440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-40relative of early flowering 6