PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G01640.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 320aa MW: 36183 Da PI: 10.0626 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye++s LPERR03G01640.2 9 KRIENPTSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 70.9 | 3.9e-24 | 78 | 171 | 7 | 99 |
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +s +++++ e+ + +++ L k++e L+ +R+llGe+Le++s+ eL++Le +Le+sl++iR +K++l+ eq+++l++ke +l+++n++Lr+k + LPERR03G01640.2 78 SSkTAQQDIEQVKADAEGLAKKLEALEAYKRKLLGEKLEECSIDELHSLEVKLERSLTSIRGRKTKLMEEQVSKLREKEIKLRKDNEDLREKCK 171 334788999**********************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.525 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.70E-41 | 3 | 74 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-32 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-24 | 82 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.416 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVRGKTQMKR IENPTSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA 60 SAQKTIERYR TYTKENISSK TAQQDIEQVK ADAEGLAKKL EALEAYKRKL LGEKLEECSI 120 DELHSLEVKL ERSLTSIRGR KTKLMEEQVS KLREKEIKLR KDNEDLREKC KNQPVPMVAP 180 VPIVASAPVT VTAADDNPGR NNTNNNMDGC LAEAAPALLQ EIVRLRLRHS PILKVRSPRI 240 SWISVLREKG DARHAMTPDL KNPHHVVYVL TCINCPHGCK CETHAPITNP PPGRNPSIGC 300 LHYRHLNRNL MCLHVFLSLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 8e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 8e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 8e-19 | 1 | 72 | 1 | 72 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G01640.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003328 | 0.0 | AB003328.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:S11905. | |||
GenBank | AK067641 | 0.0 | AK067641.1 Oryza sativa Japonica Group cDNA clone:J013108C22, full insert sequence. | |||
GenBank | AK104921 | 0.0 | AK104921.1 Oryza sativa Japonica Group cDNA clone:001-047-H02, full insert sequence. | |||
GenBank | AY332476 | 0.0 | AY332476.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL20) mRNA, complete cds. | |||
GenBank | CT830037 | 0.0 | CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630979.1 | 1e-118 | MADS-box transcription factor 50 | ||||
Refseq | XP_025880188.1 | 1e-118 | MADS-box transcription factor 50 | ||||
Swissprot | Q9XJ60 | 1e-119 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A0D9VNV3 | 0.0 | A0A0D9VNV3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G01640.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-66 | AGAMOUS-like 20 |