PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 568aa    MW: 61607.2 Da    PI: 9.6177
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.61.1e-3072156187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++r++k+C+ek+en+ k+yk++k+g+ +r  ++ +++++f++lea
  LPERR03G01010.1  72 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRNAKKCREKFENVDKYYKRTKDGRAGR--GDGKNYRFFTELEA 156
                      8********************************************************************97..77889******985 PP
2trihelix109.32.5e-34394479187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+eme r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  LPERR03G01010.1 394 RWPKAEVHALIQLRTEMEARYQDSGPKGPLWEDISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 479
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.02269131IPR001005SANT/Myb domain
PfamPF138374.0E-2171157No hitNo description
CDDcd122031.31E-2771136No hitNo description
PROSITE profilePS500906.65571129IPR017877Myb-like domain
PROSITE profilePS500907.271387451IPR017877Myb-like domain
SMARTSM007170.0091391453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-4392450IPR009057Homeodomain-like
PfamPF138371.0E-23393480No hitNo description
CDDcd122038.97E-30394458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MQQQQQQQPG SMPPFSAAGT GEAAPSPISS RPPPPQPEQA ADEHQLGNGS SSLLEHDGMA  60
GGESAAGGGG NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYKRNAKK  120
CREKFENVDK YYKRTKDGRA GRGDGKNYRF FTELEALHGA ARPHPPPPPQ PAPRMSTIPA  180
PIPIIPTPII SAMDAAACVM TMDDVSFSSG SDTEETAEED GNNNNSHKRK RRHGGGDGKP  240
AMRMFEALMR QVMERQEAMQ QRLLEAIERR DQERMIREEA WRRQEIARLA RDQDALAHDR  300
AIAASRDAAV ISFIQRLTGQ SIPTAAAVIT PPPPPLQPTP VASAAPPHHH IMPMTPQPQL  360
QPPQSKESTA VAVIPDQAAA QQHETAAAAA SSSRWPKAEV HALIQLRTEM EARYQDSGPK  420
GPLWEDISAG MRRMGYSRSS KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYYHQLDAL  480
YRSKANANAV AAAGSPSTPA ITVLAPVPLS QSTPPPPHGE HGSNGNGING WPASAAAVGA  540
NNGGTQTKAS NGNGNGVVMD NNKVILFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418001e-116AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.10.0trihelix transcription factor GTL1
TrEMBLA0A0D9VNK70.0A0A0D9VNK7_9ORYZ; Uncharacterized protein
STRINGLPERR03G01010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-68Trihelix family protein