PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G00720.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91765.4 Da    PI: 5.9799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G00720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-182785357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  LPERR03G00720.2 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                     5678****************************************************996 PP
2START163.81.3e-511653722204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++  e+      g  g+++l
  LPERR03G00720.2 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRNLEVFTMFPAGngGTVEL 257
                      789*******************************************************9999988888.*******9999999998888***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  LPERR03G00720.2 258 VYTQLYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 351
                      ***************************************9999999898999****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  LPERR03G00720.2 352 LYESSRVVAQKMTTAALRHIR 372
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-18985IPR009057Homeodomain-like
PROSITE profilePS5007115.4672286IPR001356Homeobox domain
SMARTSM003894.1E-162490IPR001356Homeobox domain
SuperFamilySSF466896.84E-162688IPR009057Homeodomain-like
CDDcd000861.17E-162787No hitNo description
PfamPF000468.4E-162885IPR001356Homeobox domain
CDDcd146864.63E-679118No hitNo description
PROSITE profilePS5084827.838155383IPR002913START domain
CDDcd088754.93E-72159375No hitNo description
SMARTSM002341.5E-39164374IPR002913START domain
Gene3DG3DSA:3.30.530.209.0E-22164350IPR023393START-like domain
SuperFamilySSF559614.4E-37164376No hitNo description
PfamPF018523.3E-49165372IPR002913START domain
PfamPF086701.8E-48696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAAAVAMRGG SSDGGGYDKV SGMDSGKYVR YTPEQVEALE RVYADCPKPT SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENSHMRQQ LQNTPLANDT SCESNVTTPQ NPLRDASNPS GLLSIAEETL TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRN  240
LEVFTMFPAG NGGTVELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSAASAQQY VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWTIMG  420
GDGVEDVVIA CNSTKKIRTS NSAGIAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASSLKTSACS LPGLRPMRFS GSQIIIPLAH TVENEEILEV VRLEGQPLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDDFPDE TPLISSGFRV IPLDMKTDGA  600
SAGRTLDLAS SLEVGSATTQ ASGDASTDDS NLRSVLTIAF QFPYEIHLQD SVAAMARQYV  660
RSIVSAVQRV SMAISPSQSG LNAGQRIISG FPEAATLARW VCQSYHYHLG AELLSQSDGD  720
AEQLLKMLWH YQDAILCCSF KEKPVFTFAN KAGLDMLETS LVALQDLTLD RIFDESGKEA  780
LFSNIPKLME QGHAYLPSGV CMSGMGRHVS FDQAVAWKVL GEDSNVHCLA FCFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G00720.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023780.0AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence.
GenBankAY4259910.0AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649248.10.0PREDICTED: homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A0D9VNG70.0A0A0D9VNG7_9ORYZ; Uncharacterized protein
STRINGLPERR03G00720.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein