PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G28390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 319aa    MW: 34847.8 Da    PI: 11.4675
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G28390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16e-33146202158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      dep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R RgsgGrF
  LPERR02G28390.1 146 DEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRVRGSGGRF 202
                      79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.7E-38144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.1145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-28147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-24148170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-24179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MQSREAAASG RDGGEEPRRL QLQAQAGARS ESASSFARRR HRGRRRVGAM LLPSSSSSSY  60
ASKGVSSRKT VDGPMRSTLT FDNNNSVLTS QNIDYGLPMG CISYPYNNSG SGVWASYRSH  120
SVFHPQIVGG GTSTRVPLPP LEVADDEPIY VNPKQYHGIL RRRQLRAKLE AQNKLVKTRK  180
PYLHESRHRH AMKRVRGSGG RFLNTKQLQQ QQQQSHTASL KITTDSQNSS GSTHLRLGGG  240
AIGDRTSFPF KALDPQDNTK VVTASGSTFT VNSAAHKDEA FFDRHGHHLS FSGHFGQAAA  300
QGGVGSMHNG TQQRVPAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-22146207263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186195RHRHAMKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G28390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647991.21e-158PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A0D9VLQ90.0A0A0D9VLQ9_9ORYZ; Uncharacterized protein
STRINGLPERR02G28390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.15e-35nuclear factor Y, subunit A6