PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G27330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19663.4 Da PI: 9.1181 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.3 | 3.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ rqvtfskRr g++KKAeELSvLCda+va+i+fs tgkl ++s LPERR02G27330.1 9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSATGKLSHFAS 59 79*********************************************9986 PP | |||||||
2 | K-box | 56.8 | 9.4e-20 | 84 | 170 | 15 | 98 |
K-box 15 eslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 l+ e++k + +e+L +R++ Ge+Le Ls++eLqqLe+ Le +l ++ +K++ +++qi+elq+k +l +en++Lr++ LPERR02G27330.1 84 LDLNLEHSKYANLNEKLAeasLRLRQMRGEELEGLSIEELQQLEKSLEAGLHRVMLTKDQQFMAQINELQRKSTQLAQENMQLRNQA 170 445555566556666665444789************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.936 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.97E-38 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.18E-29 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.985 | 86 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.8E-17 | 91 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSA TGKLSHFASS 60 HMNEIIDKYN THSNNLGKAE QPSLDLNLEH SKYANLNEKL AEASLRLRQM RGEELEGLSI 120 EELQQLEKSL EAGLHRVMLT KDQQFMAQIN ELQRKSTQLA QENMQLRNQA AL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 4e-19 | 1 | 73 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G27330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003322 | 0.0 | AB003322.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:C50086. | |||
GenBank | AB107957 | 0.0 | AB107957.1 Oryza sativa Japonica Group RMD1 mRNA for MADS domain protein, complete cds. | |||
GenBank | CT834517 | 0.0 | CT834517.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022M02, full insert sequence. | |||
GenBank | FJ750938 | 0.0 | FJ750938.1 Oryza sativa clone KCS016G07 MADS-box transcription factor 22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624915.1 | 1e-112 | MADS-box transcription factor 22 | ||||
Swissprot | Q9XJ66 | 1e-113 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A0D9VLC0 | 1e-120 | A0A0D9VLC0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G27330.1 | 1e-121 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-58 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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