PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25570.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 296aa    MW: 32832 Da    PI: 9.7411
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25570.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-281059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrng+lKKAeELS+LCdaev ++ifsstg+lye+s+
  LPERR02G25570.2 10 RIDNSTSRQVTFSKRRNGLLKKAEELSILCDAEVGLVIFSSTGRLYEFSN 59
                     8***********************************************95 PP
2K-box32.44e-121562213297
            K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      qr  R+l+ e+L+ L + +Lq Le++Le sl++iR +K  l++++  el +  + +++++ +L +k
  LPERR02G25570.2 156 QRARRQLMCEELSGLGVSDLQGLENRLEISLRSIRMRKGSLIHQENIELSRSLNLMSQQKLELYNK 221
                      7889***************************************99998888888888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.61E-43278No hitNo description
SuperFamilySSF554553.79E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.918138228IPR002487Transcription factor, K-box
PfamPF014861.3E-10156221IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAEELSILCD AEVGLVIFSS TGRLYEFSNT  60
NMKAVIDRYT NAKEELLDGN ATSEIKATAT GSWDGRIWRV KTGGDEGDDL RRRGRWQPRG  120
DGGAAPREAL TGGGEDRGST RVPRLAGDDG TGQGGQRARR QLMCEELSGL GVSDLQGLEN  180
RLEISLRSIR MRKGSLIHQE NIELSRSLNL MSQQKLELYN KACEQRGSTD LNESSSIPYS  240
FRIMHNANTH PNLELSQSKQ KGECSKTNVP ELGRATWLNP IHPFCSFPSR ACAVLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20174174Myocyte-specific enhancer factor 2B
1tqe_Q3e-20174174Myocyte-specific enhancer factor 2B
1tqe_R3e-20174174Myocyte-specific enhancer factor 2B
1tqe_S3e-20174174Myocyte-specific enhancer factor 2B
6c9l_A3e-20174174Myocyte-specific enhancer factor 2B
6c9l_B3e-20174174Myocyte-specific enhancer factor 2B
6c9l_C3e-20174174Myocyte-specific enhancer factor 2B
6c9l_D3e-20174174Myocyte-specific enhancer factor 2B
6c9l_E3e-20174174Myocyte-specific enhancer factor 2B
6c9l_F3e-20174174Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416441e-101AK241644.1 Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence.
GenBankAY1777021e-101AY177702.1 Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds.
GenBankCT8353721e-101CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626794.11e-108MADS-box transcription factor 57 isoform X1
SwissprotQ6Z6W21e-108MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A0D9VKL70.0A0A0D9VKL7_9ORYZ; Uncharacterized protein
STRINGLPERR02G25570.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-50AGAMOUS-like 21
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]