PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G23680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 30889.9 Da PI: 8.974 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.6e-34 | 24 | 78 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl LPERR02G23680.1 24 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 78 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.032 | 21 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-33 | 21 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-25 | 24 | 79 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.68E-17 | 24 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-10 | 26 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.4E-24 | 123 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MFEGMERMGY GGAGAGVVLS RDPKPRLRWT PDLHERFVEA VTKLGGPDKA TPKSVLRLMG 60 MKGLTLYHLK SHLQKYRLGK QNKKDTGLEA SRGAFAAHGI SFSSAAPPTI PSSENNNTGE 120 TPLADSLRYQ IEVQRKLHEQ LEVQKKLQMR IEAQGKYLQS ILEKAQNNLS YDSTGTASLE 180 ATRSQLTDFN LALSGFMNNV SQVCEQNNGE LAKAISEDSL RNSSLGFQLY HGIQEPDDVK 240 CSQDEGLLLL DLNIRGGYDH LSNSAMRGGE SGLKISQHRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-21 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G23680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059448 | 0.0 | AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647740.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | C0SVS4 | 3e-68 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A0D9VJV6 | 0.0 | A0A0D9VJV6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G23680.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 7e-67 | G2-like family protein |
Publications ? help Back to Top | |||
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