PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 224aa    MW: 23930.5 Da    PI: 5.12
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1853103155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  LPERR02G22610.1  53 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 103
                      68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1453103IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2154112IPR016177DNA-binding domain
SMARTSM003806.0E-2854117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3054113IPR001471AP2/ERF domain
PROSITE profilePS5103222.08954111IPR001471AP2/ERF domain
PRINTSPR003672.7E-85566IPR001471AP2/ERF domain
CDDcd000185.87E-2155113No hitNo description
PRINTSPR003672.7E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDVSAALSSD YSSGTPSPVA ADADDGSSSY MTVSCAPPKR RAGRTKFKET RHPVYKGVRR  60
RNPGRWVCEV REPHGKQRIW LGTFETAEMA ARAHDVAALA LRGRAACLNF ADSPRLLRVP  120
PVGASHDDIR RAAAEAAEAF RQPPDEGNAT TEEAGADAPG AHSNAAAQFA ASHPYYQVDD  180
GLDLGMQGYL DMAQGMLIEP PPMAGDTVSG GEDGNDDEVK LWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14521101271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624757.11e-118dehydration-responsive element-binding protein 1G
SwissprotQ6EP771e-119DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLA0A0D9VJG71e-163A0A0D9VJG7_9ORYZ; Uncharacterized protein
STRINGLPERR02G22610.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-41C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]