PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G22340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 27099 Da PI: 10.0345 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 19 | 71 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt eLH +Fv+a++ LGG++kAtPk+il+lm+v gLt++hvkSHLQ+YR LPERR02G22340.1 19 PRLRWTAELHLSFVRAIDCLGGQHKATPKHILQLMDVRGLTISHVKSHLQMYR 71 9**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.135 | 15 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 15 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.68E-15 | 16 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.0E-23 | 19 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGSGGRKGAA RQYNRSKEPR LRWTAELHLS FVRAIDCLGG QHKATPKHIL QLMDVRGLTI 60 SHVKSHLQMY RGTRLGIGQK DMQPELHDLK KHSFGSDEQN LKEFMCPPIK RAKVGTEASG 120 TYKCMQGSSD MMNAPPGTRY FIDDCTQLQE MPVDRTRRRS EHDGAAAARA PPAAASSNLQ 180 ALGFRVQGTS EEPFMVHQKC QEPGGQCGIY MLAQWYWHHR TSVYRTLPQM ALFFHRNTTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 18 | 74 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G22340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004160 | 7e-62 | AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09. | |||
GenBank | AP004188 | 7e-62 | AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11. | |||
GenBank | AP014958 | 7e-62 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 7e-62 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624520.1 | 2e-96 | uncharacterized protein LOC107276067 | ||||
TrEMBL | A0A0D9VJD0 | 0.0 | A0A0D9VJD0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G22340.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-29 | G2-like family protein |