PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 676aa    MW: 73205.1 Da    PI: 4.4831
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.61.7e-28136217187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk p Wee s+k+++ g++rs+++Ckek+en+nk+yk++keg+ +r     +++++f qlea
  LPERR02G21190.1 136 RWPRDETLALIRIRSEMDAAFRNATLKTPVWEELSRKLAKLGYQRSAQKCKEKFENVNKYYKRTKEGRAGR-----QSYRFFPQLEA 217
                      8********************************************************************97.....4699****985 PP
2trihelix106.61.7e-33432517187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+kqev+aLi++r e+ee++++   k++lWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  LPERR02G21190.1 432 RWPKQEVQALINLRMEKEEQYSEMGPKGALWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 517
                      8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.783129193IPR017877Myb-like domain
SMARTSM007171.1133195IPR001005SANT/Myb domain
PfamPF138376.5E-21135218No hitNo description
CDDcd122036.86E-28135200No hitNo description
PROSITE profilePS500907.666425489IPR017877Myb-like domain
SMARTSM007172.4E-4429491IPR001005SANT/Myb domain
CDDcd122034.86E-27431496No hitNo description
Gene3DG3DSA:1.10.10.601.4E-4431488IPR009057Homeodomain-like
PfamPF138375.5E-22432518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MQHPEGAGDA GGDPPCGAAP TPPPTMPVYS LPPPPPAPAS SDVMIPTPTP ASSDVMIPTP  60
TMLVFSLPQP PPAPASGEVM IPTPTQPAAP EEFQAAAAAG SGSAAAVKPN DDAMMVDVDA  120
ATPAAGGGGS GSSGNRWPRD ETLALIRIRS EMDAAFRNAT LKTPVWEELS RKLAKLGYQR  180
SAQKCKEKFE NVNKYYKRTK EGRAGRQSYR FFPQLEALHA AASQRQHQSG MPVEDPRPLS  240
MARMLPAMDD LGFLSMSSEE DDSETDGDET DGEGDDEAPD GHDDDDYGAG EGSRSRSSRK  300
QLMAMFEGMM KQVTEKQDAM QRAFMEALEK WESERIEREE AWRRKEVARI NREREILSQE  360
RAAAATRDAA VIAFLQRVGA TDLSPSSAAA AARAAGLQLT PVPPAPRAKK AERWVFGEGS  420
SSGTTASPSP SRWPKQEVQA LINLRMEKEE QYSEMGPKGA LWEEIAAGMQ RIGYNRSAKR  480
CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLDAIYR KKQYFAGRGS GGDGGVTIAS  540
AANSLAIVVV PEQEINQREL EGKSSNDGNL MQAVPLLEYY KIADDKEEEG TEGIEAEPII  600
REEEEETESD EEMGGNYTDE GDDDDKMQYK IEFQNPNAGG GGDDDDDAPA PATAAAATGS  660
TSTPTPTNNT SSVAVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117421e-120AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
GenBankAP0048391e-120AP004839.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519A12.
GenBankAP0048681e-120AP004868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0048B08.
GenBankAP0149581e-120AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-120CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647608.20.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
RefseqXP_015688412.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X3
RefseqXP_015688413.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X3
SwissprotQ391178e-70TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D9VIX00.0A0A0D9VIX0_9ORYZ; Uncharacterized protein
STRINGLPERR02G21190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-48Trihelix family protein