PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G20990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 250aa MW: 26644.4 Da PI: 8.0253 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 221.7 | 2.1e-68 | 19 | 209 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnveke 89 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ aa + ++ ++ ll+e+ +++++l + + + LPERR02G20990.1 19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPANQLHFGPSllsptsphgLLDEMAFQTSSLLMEQASA 112 679*********************************************9977777776677777777777899995666665555555444332 PP YABBY 90 esa.stsvssekl.............senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + + t +ss++ + +++ e+p+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ih LPERR02G20990.1 113 SLSgITGRSSSSCasnapamqmppakPVQQEPELPKNAPpsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 206 22101111111112223334558887788888898865557***************************************************** PP YABBY 168 fgl 170 fgl LPERR02G20990.1 207 FGL 209 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-70 | 20 | 209 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.19E-8 | 147 | 202 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-4 | 158 | 201 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSSSSSSAV FPLDHLASSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRGLLLP PAAPPANQLH FGPSLLSPTS PHGLLDEMAF QTSSLLMEQA SASLSGITGR 120 SSSSCASNAP AMQMPPAKPV QQEPELPKNA PPSVNRPPEK RQRVPSAYNR FIKDEIQRIK 180 AGNPDISHRE AFSAAAKNWA HFPHIHFGLM PDQGFKKTFK PQDGSEDILL KDSLYAAAAA 240 AAANMGVNPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G20990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 0.0 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 0.0 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647599.1 | 1e-155 | PREDICTED: protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-145 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-145 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0D9VIU4 | 0.0 | A0A0D9VIU4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G20990.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-62 | YABBY family protein |
Publications ? help Back to Top | |||
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