PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G17010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 420aa    MW: 44056.3 Da    PI: 6.8115
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G17010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.11.3e-1469150286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+   +       ++pyf++l+
  LPERR02G17010.1  69 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 150
                      *************************************87889976333778**************99998886.......5******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-2367150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDDDGGALSP SSSLSPSRSP SPLPVADPVT VAAAPPGHLA VALPIPKPGS SASGGGGGGG  60
GGGGREDAWS DGATSTLIDA WGERFVALGR GSLRHPQWQE VAEVVSSRDG YSKPPKSDVQ  120
CKNRIDTLKK KYKVEKAKPD SSWPYFHRLD LLLAAVQKPG GAAASAAAAG AGNSGGSGGG  180
GGSAAARSTA PMAPRVNFPQ RTRTQFLPPS AGVKRRMPSP PQASVSSESS DGFPPEPPLA  240
AANGKRRRVE EEVNGADSSN RAQGLRELAE AIRRFGEVYE RVESAKREQE LRMERDRLEV  300
ARELEDQRVQ FFVKMQMELS KANNAGSSAA AAVVGAAATA VAADGNGTRR TAVAGDVGTS  360
SNHHVRYRFK GGRHHHTPQQ PQHQYNENNV AEATRGTGNG SDTDNKEDED DVEDEEDESQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G17010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.10.0trihelix transcription factor ASIL1
TrEMBLA0A0D9VH980.0A0A0D9VH98_9ORYZ; Uncharacterized protein
STRINGLPERR02G17010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-31sequence-specific DNA binding transcription factors