PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G16200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 39495 Da PI: 7.3571 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 66 | 88 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H LPERR02G16200.2 66 CSyeGCGKTFVDAGALRKHAHVH 88 77779**************9887 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.2e-05 | 93 | 117 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+k F ++s LkrH H LPERR02G16200.2 93 YVCHyeGCDKKFLDSSKLKRHFLIH 117 9********************8877 PP | |||||||
3 | zf-C2H2 | 20.8 | 1e-06 | 123 | 147 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nLk H++tH LPERR02G16200.2 123 FICPheGCGKAFSLDFNLKAHMKTH 147 78**********************9 PP | |||||||
4 | zf-C2H2 | 13.4 | 0.00023 | 153 | 178 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C ++F++ s L+ Hi+ H LPERR02G16200.2 153 HVCKypECARRFTQESKLRAHIKQqH 178 789999****************9877 PP | |||||||
5 | zf-C2H2 | 12.1 | 0.00061 | 221 | 246 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H LPERR02G16200.2 221 YVCPydGCAKAYIHEYKLNLHLKKeH 246 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-14 | 59 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.928 | 64 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0021 | 64 | 88 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.16E-6 | 65 | 89 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.3E-14 | 91 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0036 | 93 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.152 | 93 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.4E-14 | 104 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-20 | 114 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.5E-4 | 123 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.217 | 123 | 152 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-6 | 149 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.118 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.049 | 153 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 155 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.1E-8 | 214 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.24E-5 | 215 | 244 | No hit | No description |
PROSITE profile | PS50157 | 8.85 | 221 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 221 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MQVAAHRRHH RWVKEWVPQD LVVAGGPCLL YKWVREDRLS ALKSKDKEQG AEVAKSEPTT 60 EVLFLCSYEG CGKTFVDAGA LRKHAHVHGE RQYVCHYEGC DKKFLDSSKL KRHFLIHTGE 120 KNFICPHEGC GKAFSLDFNL KAHMKTHSAD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK 180 GGLQNPGESA TNRSVAGDHS HNNNTPKLSA TPPVPSADRP YVCPYDGCAK AYIHEYKLNL 240 HLKKEHPNHY QDAGAQAASS KSHMSKRRSK PVMTDKMPLP KIPKRRGYTV PPPYQPVNVV 300 EEHQWPRNEQ YEDDSEETEE EGDNVEDGTR YRAASSDDDE ETEDEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 6e-33 | 59 | 174 | 8 | 122 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 285 | PKIPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G16200.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103760 | 0.0 | AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627689.1 | 0.0 | zinc finger transcription factor YY1 isoform X1 | ||||
Swissprot | Q2V3L3 | 1e-103 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A0D9VGZ2 | 0.0 | A0A0D9VGZ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G16200.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-104 | C2H2 family protein |
Publications ? help Back to Top | |||
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