PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G15770.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Trihelix

Protein Properties

Length: 400aa MW: 45803.1 Da PI: 7.0838

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G15770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.7	2e-20	88	187	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 +W+ ++v++L+ + +++e++ ++ ++k++W+ vs++m +rgf +sp+qC++k+++lnkryk+++e+ +++t ++ +++ LPERR02G15770.1 88 KWSSNMVKLLVSSVAYIDEDVDADYgggasarqkhamlKRKGKWKLVSAVMTDRGFPVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVEQPE 181 7************9999999864445567778888899******************************************5499999998 PP trihelix 81 yfdqle 86 +++ ++ LPERR02G15770.1 182 LLEAMQ 187 888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-18	86	212	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEGNLPPRAL VHHGGGGAFD LEASMQHPPP PFPFAQDPHL HHGMVPVRPN PMMQEFGNVV 60 KTSPSDEEDV DDGHHHGGGG KIQWHRVKWS SNMVKLLVSS VAYIDEDVDA DYGGGASARQ 120 KHAMLKRKGK WKLVSAVMTD RGFPVSPQQC EDKFNDLNKR YKRLTEILGR GTACQIVEQP 180 ELLEAMQISG KLKEEARKQL ISKHLHYEEM CSYHNRNRMC LLEDPTLQKS LRLALRSGEE 240 HTKKNQFGYD DEDFSDDDEF DDLEVSAEDH HHRIHGGAKR LKQHDQEETH FGSNLSEVAV 300 IDMNKMLSEG SGGPTAEKSH PTRAVHGIRV EKRRLKIKAA MLKVEHKHLK WQMYCKEKDR 360 ELEKMRLENE KMKLENERME LELKLKEIEM GIKPKKIFGD

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEGNLPPRAL VHHGGGGAFD LEASMQHPPP PFPFAQDPHL HHGMVPVRPN PMMQEFGNVV  60
KTSPSDEEDV DDGHHHGGGG KIQWHRVKWS SNMVKLLVSS VAYIDEDVDA DYGGGASARQ  120
KHAMLKRKGK WKLVSAVMTD RGFPVSPQQC EDKFNDLNKR YKRLTEILGR GTACQIVEQP  180
ELLEAMQISG KLKEEARKQL ISKHLHYEEM CSYHNRNRMC LLEDPTLQKS LRLALRSGEE  240
HTKKNQFGYD DEDFSDDDEF DDLEVSAEDH HHRIHGGAKR LKQHDQEETH FGSNLSEVAV  300
IDMNKMLSEG SGGPTAEKSH PTRAVHGIRV EKRRLKIKAA MLKVEHKHLK WQMYCKEKDR  360
ELEKMRLENE KMKLENERME LELKLKEIEM GIKPKKIFGD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G15770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647354.1	0.0	PREDICTED: uncharacterized protein LOC102710758
TrEMBL	A0A0D9VGU0	0.0	A0A0D9VGU0_9ORYZ; Uncharacterized protein
STRING	LPERR02G15770.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-60	sequence-specific DNA binding transcription factors