PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G13930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 263aa    MW: 29817.7 Da    PI: 9.7737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G13930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.2e-12144185351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  LPERR02G13930.1 144 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 185
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.269119198IPR001471AP2/ERF domain
SMARTSM003806.1E-5143200IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8143188IPR016177DNA-binding domain
PfamPF008472.3E-6143186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-7146190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRGRSHPSSL YPSPTSPTNF SFFFSPLLLL LLFLAAALVI PPPPPPSPAG SRRRWHLKHG  60
KNSLPVDFPK PIENENSVET AHPNIKPFSV HPLPLTKTSD VLPESSNGSD SLKEEKNQYY  120
PGKEIKRRKR HRRKQYVDQE PCIMRGVYFK NMKWQAAIKV DKKQIHLGTV GTQEEAARLY  180
DRAAFMCGRE PNFELSEEEK KELQQYTWQD FLNLTRDTIT SKKQRKVRNK ADSPIGQSDG  240
DTEMINGGGS SHSEDGDVET STS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G13930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151501.11e-123uncharacterized protein LOC100285135
TrEMBLA0A0D9VG680.0A0A0D9VG68_9ORYZ; Uncharacterized protein
STRINGLPERR02G13930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-41ERF family protein