PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G12820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 23126.8 Da PI: 9.8822 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.4e-29 | 144 | 201 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +p ++++tY g+H+h LPERR02G12820.1 144 ADDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYDGDHRH 201 69************************9888***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-15 | 106 | 141 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 131 | 204 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.469 | 138 | 204 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-25 | 139 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-33 | 143 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-25 | 145 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MADPFPVVAR GNEQGDAAGQ LQVTSSKLRT AVSMLNRTGH ARFRRGPVVV QETAAACAES 60 AEVARDPIAR CDGLSASASS SFPSSLTTGA TGGEGSVSNA RALLPSEGDD GARCHCSKKR 120 KSPWRARRRI RVPAISSRNA DIPADDYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH 180 VERDPGEPAM LIVTYDGDHR HGDPGTLPAG EAHNDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-20 | 131 | 204 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G12820.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110587 | 1e-124 | AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence. | |||
GenBank | AY676923 | 1e-124 | AY676923.1 Oryza sativa (indica cultivar-group) transcription factor WRKY42 (WRKY42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624842.1 | 4e-84 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 3e-55 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0D9VFR6 | 1e-156 | A0A0D9VFR6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G12820.1 | 1e-157 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-51 | WRKY DNA-binding protein 11 |