PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G08020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 404aa    MW: 42835.1 Da    PI: 6.6421
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G08020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-093273651854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  LPERR02G08020.1 327 MFENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 365
                      57766689*****************************88 PP
2BELL30.97e-11199259972
             BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      ++ Ll++l+ +d++Y+q+ +++qt  + F    g g+a + + +A +a+S  +  L+ +ia+ i
  LPERR02G08020.1 199 RSELLTILQLMDQKYNQCLDEIQTTTARFS---GAGAAGICAPFAHRAVSAMYHGLRRRIAGEI 259
                      689************************995...899999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.4E-14185256IPR006563POX domain
PROSITE profilePS5007111.58306369IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-25309382IPR009057Homeodomain-like
SMARTSM003891.9E-7309373IPR001356Homeobox domain
CDDcd000864.04E-12309370No hitNo description
SuperFamilySSF466891.07E-15310378IPR009057Homeodomain-like
PfamPF059208.0E-16326365IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVDFHPTMSS NPSFSHFGFD AMNGYFMSTA TGNALLAAGD SPLFHPTMAP PDHGGETAAM  60
EFAAANNLVL ASLATQLFGA APAPPQPEEE MGGGGGGYGV AGGESSGAVS LACLGHSDAM  120
AAASAGWSPE KKPSCNWIGN NAGGWLFAGL PEAAAAAGFV YAATPATASE LSLSLCSRSS  180
SESFLNAAAA GDATSHRLRS ELLTILQLMD QKYNQCLDEI QTTTARFSGA GAAGICAPFA  240
HRAVSAMYHG LRRRIAGEIM SATARPCRGG HESSSAVTGG GERERNWESA FIQKHWAVHQ  300
LRRGEQQCWR PQRGLPEKSV AVLKAWMFEN FLRPYPKDSE KEMLAARSGL SRNQVSNWFI  360
NARVRLWKPM IEEMCEELKR SSSGISGGNQ ALAMEHLSSQ DVVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G08020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098491e-144AK109849.1 Oryza sativa Japonica Group cDNA clone:002-148-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.11e-128homeobox protein ATH1 isoform X2
RefseqXP_025878539.11e-128homeobox protein ATH1 isoform X2
TrEMBLA0A0D9VDY80.0A0A0D9VDY8_9ORYZ; Uncharacterized protein
STRINGLPERR02G08020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-56homeobox gene 1