PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G03410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 26716.4 Da PI: 8.2325 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 8e-19 | 135 | 189 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq + Lee F ++ +s++++ eLA klgL+ rqV vWFqNrRa+ k LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTK 189 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.5 | 6.6e-37 | 135 | 223 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rls+eq++lLEesF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d+e L+r++++l++en+rL+++ ++Lr+ LPERR02G03410.1 135 RKKLRLSREQATLLEESFSAHNILSHAQKHELAGKLGLSARQVEVWFQNRRARTKLKQTEADCEILRRWCERLADENARLRHDLADLRS 223 69***********************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.232 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-14 | 133 | 195 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.43E-18 | 134 | 200 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 135 | 196 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.50E-13 | 135 | 192 | No hit | No description |
Pfam | PF00046 | 3.6E-16 | 135 | 189 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.0E-6 | 162 | 171 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-6 | 171 | 187 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 1.7E-11 | 191 | 234 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.2E-7 | 191 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTSSSSLTTT TTSSNMEADS AVEFSDTRLS LAIGCSPSAP PPPPAAEQRR AVVLFGELFP 60 APPRESSSPA TAAAGGHTIS VGKRDQRGET AATTRNNSSS KKARTAVRGG GGDDDDGVDR 120 WSPSGGGGDD EGANRKKLRL SREQATLLEE SFSAHNILSH AQKHELAGKL GLSARQVEVW 180 FQNRRARTKL KQTEADCEIL RRWCERLADE NARLRHDLAD LRSSSFYSSL SAAAVCSSCA 240 GAAAGEDTRR Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 191 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G03410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624893.1 | 2e-66 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 2e-67 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A0D9VC95 | 0.0 | A0A0D9VC95_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G03410.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-34 | homeobox-leucine zipper protein 3 |