PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G03280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 677aa    MW: 75806 Da    PI: 6.8123
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G03280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-09446492652
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      ++ +e +e+L ++F++n  p ++ +e L+++lg++ +++  WF+N R
  LPERR02G03280.1 446 RIPPEAVEVLRKAFAENELPARNVKENLSTELGISFEKIDKWFKNTR 492
                      566899***************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.43E-7182251IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-5194250IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.662195251IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.601.3E-12433492IPR009057Homeodomain-like
PROSITE profilePS5007112.665438498IPR001356Homeobox domain
CDDcd000861.80E-8439500No hitNo description
SuperFamilySSF466897.27E-10440502IPR009057Homeodomain-like
SMARTSM003892.4E-9440502IPR001356Homeobox domain
PfamPF000464.9E-7446492IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MHTPEKKPVC YTSRRSLQQK TESSSELISV SKRVTRQNTS LKPDSPPRRT TRSSANLAKC  60
IKNKHHRSPL KQRRGSDAAS GKSATGPIRR RHKQNRKNDD CDEVTRIERR ARYLLLKIKQ  120
EQNLLDAYSG DGWNGHSREK IKPEKELHRA KRQIIKYKIA IRDIINQLDS YTSSGSKDDS  180
VMPPDGCHES VNPEHTICSR CNSHESFPDN NIILCEGSCK LACHQKCLEH PSDKILSTTR  240
YGKLCKYCFS KTRILEAVNA HLGTSFTVKC PSNDIFKEAT EHLDSDEGLG EDWLSEYSGD  300
EDYDPDENEA SSSNGEENKS ADSNCSGSPL YSPNDDIPDF ISADFNEAEG FCHDSSNLGI  360
DFGEDGLAEV LTYQRPRRDV DYTQLNEQMF GEPIGNEEQS EDEDWGLNRR KKRRTGSTGV  420
GTNSRGGVSD VVSNEKAQRQ KRKLFRIPPE AVEVLRKAFA ENELPARNVK ENLSTELGIS  480
FEKIDKWFKN TRCAALRDRK AGQSSGSSKR SRTSIEKAEN STKVDQMDNS CFLPLSEIIN  540
VPTRLQKKST SSPPRPQDNE ACSSPTDKIK ESTPPTIKPS MADSSQVMNN NISTGETAVS  600
WVDTWASDAL HFLDVSDDEH FFDVIEKVCG LENRLQRLKE NMLSSSSSSI DNNVAAENGL  660
QNQVVLVPAA ELKDKAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G03280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652570.0AK065257.1 Oryza sativa Japonica Group cDNA clone:J013002J16, full insert sequence.
GenBankAK0705020.0AK070502.1 Oryza sativa Japonica Group cDNA clone:J023051F17, full insert sequence.
GenBankAK0988550.0AK098855.1 Oryza sativa Japonica Group cDNA clone:J013000I05, full insert sequence.
GenBankFJ9402070.0FJ940207.1 Oryza sativa Japonica Group clone KCS002D03 homeodomain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626817.10.0pathogenesis-related homeodomain protein isoform X1
TrEMBLA0A0D9VC720.0A0A0D9VC72_9ORYZ; Uncharacterized protein
STRINGLPERR02G03280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-73pathogenesis related homeodomain protein A