PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G02380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 158aa    MW: 16708.7 Da    PI: 7.423
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G02380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.51.4e-133277449
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                      +r++r+q+NRe+ArrsR RK+  ++eL+  v +L  eN +L+  l
  LPERR02G02380.1 32 QRRAKRMQSNRESARRSRMRKQRHLDELTAQVSQLRRENAQLATAL 77
                     689***************************************8655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-162993IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7033173IPR004827Basic-leucine zipper domain
PfamPF001708.4E-123277IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-123381No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-1033102No hitNo description
CDDcd147021.22E-163482No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MASSSGSGGA LSPPASATAT ADQDELRAVM EQRRAKRMQS NRESARRSRM RKQRHLDELT  60
AQVSQLRREN AQLATALGVT AQGLLAVDAD NAVLRTQAAE LAARLRSLDD ILSCISNTTA  120
AAAAITVAGD HLIGFDAASA AAGFDDLFRS SSEMYQLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G02380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689573.11e-61PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D9VBU61e-106A0A0D9VBU6_9ORYZ; Uncharacterized protein
STRINGLPERR02G02380.11e-107(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-29G-box binding factor 6