PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G00380.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Trihelix

Protein Properties

Length: 561aa MW: 59144.5 Da PI: 5.0516

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G00380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.6	1.3e-31	378	462	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +eer+++ lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ LPERR02G00380.1 378 RWPKHEVEALIRVRTGLEERFQEPGLKGPLWEEVSARMAAAGYRRNSKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 462 8******************************************************************98.99999*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.085	371	435	IPR017877	Myb-like domain
CDD	cd12203	1.54E-29	377	442	No hit	No description
Pfam	PF13837	5.0E-23	377	464	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MQSGYGGHHH QNKQQHQPPP PARWAPQQHH HHHLGLDVEA AVPESSGAGA GSAASGAAAP 60 PGVPPFLAAA MRFKLDVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGDDEAATE 120 SRLRRWPGEE EARPLDIDYI HSASSSKRTG GKDKAPTPES PAPPAPANYF KNKPDDNAAA 180 AAASSGAVNY KLFSELEAIY KPGSGGAQTG SGSGLTGDDN AMLAPPMADL PAAAAATGPP 240 LNTSETSAGE DAAAVMQPAP RLMEHQESLH RQFLDTMERR ERDRAARDEA WRRQEADKFS 300 REAAARAADR ASAAAREAAI ISYLEKISGE TITLPVAPPV PPPAAAGDDV MMTSSQDVGK 360 ELVSYDGGEG MHHLSSSRWP KHEVEALIRV RTGLEERFQE PGLKGPLWEE VSARMAAAGY 420 RRNSKRCKEK WENINKYFRK AKESGKKRPA HAKTCPYFDE LDRLYSRSKN AAGDDSGSKG 480 SELLDAVVKN PEVRCGRPPG FPFDDEGGNE EGRKAEEDGD VAAGHDDGDG EKDGVGTSVT 540 GRATDQAEED DEMDESHHDD H

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MQSGYGGHHH QNKQQHQPPP PARWAPQQHH HHHLGLDVEA AVPESSGAGA GSAASGAAAP  60
PGVPPFLAAA MRFKLDVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGDDEAATE  120
SRLRRWPGEE EARPLDIDYI HSASSSKRTG GKDKAPTPES PAPPAPANYF KNKPDDNAAA  180
AAASSGAVNY KLFSELEAIY KPGSGGAQTG SGSGLTGDDN AMLAPPMADL PAAAAATGPP  240
LNTSETSAGE DAAAVMQPAP RLMEHQESLH RQFLDTMERR ERDRAARDEA WRRQEADKFS  300
REAAARAADR ASAAAREAAI ISYLEKISGE TITLPVAPPV PPPAAAGDDV MMTSSQDVGK  360
ELVSYDGGEG MHHLSSSRWP KHEVEALIRV RTGLEERFQE PGLKGPLWEE VSARMAAAGY  420
RRNSKRCKEK WENINKYFRK AKESGKKRPA HAKTCPYFDE LDRLYSRSKN AAGDDSGSKG  480
SELLDAVVKN PEVRCGRPPG FPFDDEGGNE EGRKAEEDGD VAAGHDDGDG EKDGVGTSVT  540
GRATDQAEED DEMDESHHDD H

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G00380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879174.1	0.0	trihelix transcription factor GTL1
TrEMBL	A0A0D9VB45	0.0	A0A0D9VB45_9ORYZ; Uncharacterized protein
STRING	LPERR02G00380.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-38	Trihelix family protein