PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G00370.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25013.1 Da    PI: 8.9117
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G00370.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-292978251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+++ rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+lye++s
  LPERR02G00370.2 29 RIEDTTSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 78
                     8***********************************************86 PP
2K-box578.1e-201061791085
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      ++  +++++ e+  L k+ie+++r + +llGe+L+s+s++eLq+Le qLeksl++iR+kK+  ll++ + l+ + k
  LPERR02G00370.2 106 CA--QQKWKSEAITLGKKIESIERYKSKLLGEGLGSCSMQELQELEVQLEKSLSSIRQKKETNLLKENRALRDQCK 179
                      44..59*************************************************************999997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.732080IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-362079IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-292242IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-3022101IPR002100Transcription factor, MADS-box
PfamPF003192.1E-262976IPR002100Transcription factor, MADS-box
CDDcd002655.71E-353098No hitNo description
PRINTSPR004049.2E-294257IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-295778IPR002100Transcription factor, MADS-box
PfamPF014863.1E-18107179IPR002487Transcription factor, K-box
PROSITE profilePS5129711.056108193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAGDLQQQQQ GGGALTAAKG RRGRREMRRI EDTTSRQVTF SKRRSGLLKK AFELSVLCDA  60
EVALIVFSPR GRLYEFASAP DLQRTIDRYL NHTKNTSSRE QGDRLCAQQK WKSEAITLGK  120
KIESIERYKS KLLGEGLGSC SMQELQELEV QLEKSLSSIR QKKETNLLKE NRALRDQCKA  180
ALSSSAMELN NEDSNNAGVG NDDDDRHYMD VETELVIGRP GTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1822105385Myocyte-specific enhancer factor 2B
1tqe_Q1e-1822105385Myocyte-specific enhancer factor 2B
1tqe_R1e-1822105385Myocyte-specific enhancer factor 2B
1tqe_S1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_A1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_B1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_C1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_D1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_E1e-1822105385Myocyte-specific enhancer factor 2B
6c9l_F1e-1822105385Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G00370.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625202.18e-90MADS-box protein SOC1 isoform X1
SwissprotQ9XJ601e-60MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0D9VB431e-162A0A0D9VB43_9ORYZ; Uncharacterized protein
STRINGORGLA02G0003200.13e-89(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-42AGAMOUS-like 20
Publications ? help Back to Top
  1. Thomson MJ,Edwards JD,Septiningsih EM,Harrington SE,McCouch SR
    Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.
    Genetics, 2006. 172(4): p. 2501-14
    [PMID:16452146]
  2. Park SJ, et al.
    Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
    Plant J., 2008. 56(6): p. 1018-29
    [PMID:18774969]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Maas LF,McClung A,McCouch S
    Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
    Theor. Appl. Genet., 2010. 120(5): p. 895-908
    [PMID:19949767]
  5. Sun C, et al.
    The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice.
    Plant Cell, 2012. 24(8): p. 3235-47
    [PMID:22892321]
  6. Choi SC, et al.
    Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.
    Plant Physiol., 2014. 164(3): p. 1326-37
    [PMID:24420930]
  7. Núñez-López L,Aguirre-Cruz A,Barrera-Figueroa BE,Peña-Castro JM
    Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor.
    PeerJ, 2015. 3: p. e817
    [PMID:25780769]
  8. Jin J, et al.
    MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant Physiol., 2015. 168(4): p. 1275-85
    [PMID:25855537]
  9. Liu X, et al.
    Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
    Plant Cell Rep., 2016. 35(2): p. 357-68
    [PMID:26518431]
  10. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  11. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  12. Alter P, et al.
    Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1.
    Plant Physiol., 2016. 172(1): p. 389-404
    [PMID:27457125]