PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36170.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 508aa    MW: 53905.5 Da    PI: 6.9459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09279326455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LPERR01G36170.2 279 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 326
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16273344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-10273330No hitNo description
PROSITE profilePS5088815.256275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16277343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6279326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDPA LSSMVSSPAS NSTAAPPDGL ALHGISPQQP  60
HYGGGTPLSS PPKLNLSMMG QFHPYPPPPP GAGGLPILEN PMPMGHLDQF LADPGFAERA  120
ARLSGFDARG GGGGYGGAAV QPQFGLPDAS PAGGSKEMEL GNTRDESSVS GPAPGGGEIP  180
LKGASDGNAR KRKASGKGKS KDSPMSTSAS KEDSSGKRCK STEERENNAA GEENSGKGKV  240
AQSNSENGKK GGKESSSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK ISQRMKLLQD  300
LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN LLAKDVRASL  360
YDLITIFVSS LVKAIRQFNL PRISGFLPDQ MHQSCSPLQS SHFPLETSGA PLPYINQPQQ  420
GNPLGCGLTN GMDNQGSMHP LDQAFCRQMG SHHPFLNGVS DAASQVGAFW QDDLQSVVQM  480
DMGQSQEIAT SSNSYNGSLQ TVHMKMEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
GenBankHQ8588640.0HQ858864.1 Oryza sativa Japonica Group isolate UT1673 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0D9V9H30.0A0A0D9V9H3_9ORYZ; Uncharacterized protein
STRINGLPERR01G36170.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-58bHLH family protein