PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G34430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 26319.6 Da PI: 8.0505 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 6.8e-43 | 32 | 130 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v++i+ lq++l+ql+++l LPERR01G34430.1 32 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDL 125 7********************************************************************************************* PP DUF260 95 allke 99 a++k LPERR01G34430.1 126 ARAKF 130 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.332 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 32 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MASSSASSVP APSGSVITIA SAAAATCGTG SPCAACKFLR RKCQPDCVFA PYFPPDNPQK 60 FVHVHRVFGA SNVTKLLNEL HPYQREDAVN SLAYEADMRL RDPVYGCVAI ISILQRNLRQ 120 LQQDLARAKF ELSKYQVAAA AANNGMAEFI GNAVPNGQSF INVGHTAALA SIGGSAACFG 180 QEQFSTVQML SAARSYEGEP IARLGGNGGY EFGYSTAAMA GGGAGHMSGL GTLGGGPFLK 240 SGIAGSDETR SGAGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-54 | 22 | 135 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-54 | 22 | 135 | 1 | 114 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G34430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200237 | 1e-150 | AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds. | |||
GenBank | AK071407 | 1e-150 | AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence. | |||
GenBank | AK119575 | 1e-150 | AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence. | |||
GenBank | EF540766 | 1e-150 | EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634701.1 | 1e-141 | LOB domain-containing protein 6 | ||||
Swissprot | A2WXT0 | 1e-142 | LBD6_ORYSI; LOB domain-containing protein 6 | ||||
Swissprot | Q8LQH4 | 1e-142 | LBD6_ORYSJ; LOB domain-containing protein 6 | ||||
TrEMBL | A0A0D9V8S9 | 0.0 | A0A0D9V8S9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G34430.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-50 | LBD family protein |
Publications ? help Back to Top | |||
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