PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G30770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 572aa    MW: 60958.2 Da    PI: 7.0016
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G30770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.5e-33228284259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  LPERR01G30770.1 228 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSL-DGQITEIVYKGTHNHA 284
                      8****************************************.***************7 PP
2WRKY105.82.2e-33393451159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  LPERR01G30770.1 393 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 451
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28218286IPR003657WRKY domain
PROSITE profilePS5081123.479222286IPR003657WRKY domain
SuperFamilySSF1182905.1E-25223286IPR003657WRKY domain
SMARTSM007741.8E-35227285IPR003657WRKY domain
PfamPF031063.6E-25228283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37378453IPR003657WRKY domain
SuperFamilySSF1182901.96E-29385453IPR003657WRKY domain
PROSITE profilePS5081138.687388453IPR003657WRKY domain
SMARTSM007741.2E-38393452IPR003657WRKY domain
PfamPF031069.7E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MTTSSSGSVE ASANSRPGSF SFASTSFTDL LGGGAAGGGG SRYKAMTPPS LPLSPPPVSP  60
SSFFNSPIGM NQADFLGSPV LLTSSIFPSP TTGAFSSQHF DWRPEVAAQS ADQVGKQEEQ  120
RNSYSDFSFQ TAPASEEATR STTFQPPVPP APLVSDRNHN GDEAYRGQQQ QQQQQTWAYQ  180
QQAAGMDASA NTASFGAAPF QATSSEMAPQ VQGSGGYSQQ QSQRRSSDDG YNWRKYGQKQ  240
VKGSENPRSY YKCTYPSCPT KKKVERSLDG QITEIVYKGT HNHAKPQNTR RSSGSAAAQV  300
LQSAGGDVSE HSFGGMSGAA ATPENSSASF GDDEIGVGSP RGGNAGGDEF DDDEPDSKRW  360
RKDGDGEGIN MAGNRTVREP RVVVQTMSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  420
TAGCPVRKHV ERASHDLRAV ITTYEGKHNH DVPAARGSAA LYRPAPPAAT TSHHYLPNQP  480
PMSYQSGAGA APYALRPEGF GGQQGSFGLG GGGAAPLQAG GSSFGGGYSG FDDARGSYMS  540
QHQQQQRQND AMHASRAKEE PGEDMFFQNS LY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36219454878Probable WRKY transcription factor 4
2lex_A4e-36219454878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G30770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769250.0AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644934.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D9V7B50.0A0A0D9V7B5_9ORYZ; Uncharacterized protein
STRINGLPERR01G30770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]