PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G30700.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 397aa MW: 42718.6 Da PI: 8.1444

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G30700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.5e-40	202	301	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael LPERR01G30700.1 202 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAEL 295 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e LPERR01G30700.1 296 EAVRAE 301 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.171	201	302	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-40	202	299	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSRNTRRNTR GGLQAQEGQA NKSSQPFNTR QHFFPSCPFT CYQLYKLPIP LITPLPFKHS 60 FLPCNSKLYT SIPSSPLSSG RSYLNLLLSF CSCCASPSHH ISQAQEYASM STESSWLKIQ 120 ILHCGLHLDH LPIPCPQKTL NSNLAFSTSA RERHDEIGKK IKREPDSAGV LIAAATTTAA 180 PIEHRIVPHR VVLGGAVNTV TPCAACKLLR RRCAQECPFA PYFSPHEPHK FAAVHKVFGA 240 SNVSKMLLEV GEAERADAAS SLVYEANLRL RDPVYGCMGA ISMLQQQVNA LEAELEAVRA 300 EIFKHRYRQA GVAGAAGLMV DDVHGTAAGF VAPAHPPPMH SSDVVSVVEA AGGQELAGAV 360 APVISSASPP VYADGQPSSS GTDYSSLNTS EHTAYFG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSRNTRRNTR GGLQAQEGQA NKSSQPFNTR QHFFPSCPFT CYQLYKLPIP LITPLPFKHS  60
FLPCNSKLYT SIPSSPLSSG RSYLNLLLSF CSCCASPSHH ISQAQEYASM STESSWLKIQ  120
ILHCGLHLDH LPIPCPQKTL NSNLAFSTSA RERHDEIGKK IKREPDSAGV LIAAATTTAA  180
PIEHRIVPHR VVLGGAVNTV TPCAACKLLR RRCAQECPFA PYFSPHEPHK FAAVHKVFGA  240
SNVSKMLLEV GEAERADAAS SLVYEANLRL RDPVYGCMGA ISMLQQQVNA LEAELEAVRA  300
EIFKHRYRQA GVAGAAGLMV DDVHGTAAGF VAPAHPPPMH SSDVVSVVEA AGGQELAGAV  360
APVISSASPP VYADGQPSSS GTDYSSLNTS EHTAYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	202	311	11	120	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	202	311	11	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G30700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	0.0	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644931.1	1e-126	PREDICTED: LOB domain-containing protein 15 isoform X1
Refseq	XP_015636038.1	1e-126	LOB domain-containing protein 15
Swissprot	Q8L5T5	6e-65	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A0D9V7A8	0.0	A0A0D9V7A8_9ORYZ; Uncharacterized protein
STRING	LPERR01G30700.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-63	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]