PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G29490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 225aa MW: 25074.4 Da PI: 6.6235 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 7.1e-11 | 70 | 119 | 1 | 50 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++l+++r+ NReA r++R++Kka + Lee+vk+L + N++L +l+ LPERR01G29490.1 70 EEDLRKTRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRTTNQQLLRRLQ 119 789******************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.7E-15 | 70 | 138 | No hit | No description |
SMART | SM00338 | 1.9E-12 | 70 | 137 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.036 | 72 | 119 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.3E-12 | 72 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.38E-8 | 73 | 120 | No hit | No description |
CDD | cd14686 | 1.32E-11 | 75 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDDELHLPIP SHLLFSHPEI SHGFDELLKN TTTCTHSHTC NAPGPSVAMH THTCLHTHIQ 60 VIASGENNVE EDLRKTRKPL GNREAVRKYR EKKKAHAAFL EEEVKKLRTT NQQLLRRLQG 120 HISLEAEVVR LRALLFDIRG KIDAEIGTFP FQKQCSFGSV TCTDHSPCFN TNAEVAVRED 180 SSRPTIVNGV IGETGIISHE LDIPEMANSV DVIPSFVNSA SLLTE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G29490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003221 | 0.0 | AP003221.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0003D09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618027.1 | 1e-143 | basic leucine zipper 23 | ||||
Refseq | XP_015618034.1 | 1e-143 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 5e-49 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A0D9V6U1 | 1e-165 | A0A0D9V6U1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G29490.1 | 1e-166 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 5e-34 | bZIP family protein |
Publications ? help Back to Top | |||
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