PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G22430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 335aa    MW: 36303.8 Da    PI: 10.1782
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G22430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1318104186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s++ ++++l+
  LPERR01G22430.1  18 CWSEGETEALVQAWGRRYVDLNRGSLRQPQWREVAEAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWIFYRDLD 104
                      7*******************************************999999********************9998775......4588888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0981182IPR017877Myb-like domain
PfamPF138377.4E-2516105No hitNo description
Gene3DG3DSA:1.10.10.603.9E-41884IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDGKPPPPNP NLPYREDCWS EGETEALVQA WGRRYVDLNR GSLRQPQWRE VAEAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWIFY RDLDMLVGPT LSATGAAGGG  120
GGGGGGKKPS PPTALPMMRR RLESPSRSPS PPSPTPAMAL PLPNYRQASN LPSAGLLFNK  180
MAAAAAAESD SEDGYNNPNN NNYADYEDDE GSQQSASRSL SSRSGGVAAG GGAGGGVSSN  240
KRKRGGGGGF GELARAVETF AEMYERMEFA KQRHAEEMER QRIKFLKDLE LKRMQAFVDV  300
QLQLAKAKHR KHPDGASEVL MSLAALPFLS TPAYL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G22430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0993960.0AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614545.11e-161trihelix transcription factor ASIL2
TrEMBLA0A0D9V4160.0A0A0D9V416_9ORYZ; Uncharacterized protein
STRINGLPERR01G22430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-27sequence-specific DNA binding transcription factors